DN618194 | Citrus Genome Database

Overview


Name	DN618194
Unique Name	DN618194
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	343

Libraries


Library Name	Type
Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: HSP60_PARBA (Heat shock protein 60, mitochondrial OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=HSP60 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.066e-33
Identity = 70/112 (62.50%), Postives = 89/112 (79.46%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I+T+EEIAQV TISANG+  +G+LI+ AMEKVGKEGVIT+ DGKT+ +ELEV EGM+ DRGY+SPYFIT+ K QK E E PLIL+ EKKIS +  ++  LE +   +RPL+I
Sbjct:  175 ITTTEEIAQVATISANGDTHVGKLISNAMEKVGKEGVITVKDGKTIDDELEVTEGMRFDRGYVSPYFITDTKAQKVEFEKPLILLSEKKISAVQDIIPALEASTSLRRPLVI 286

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_CAUCR (60 kDa chaperonin OS=Caulobacter crescentus GN=groL PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.066e-33
Identity = 68/112 (60.71%), Postives = 91/112 (81.25%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            ++T+ EIAQVGTISANG++E+GE+IAKAM+KVG EGVIT+ + KT   EL+VVEGM+ DRGY+SPYFITN    + +LE+PLIL+ EKK+S+L  ++ VLE  ++  RPLLI
Sbjct:  138 VTTNAEIAQVGTISANGDKEVGEMIAKAMDKVGNEGVITVEEAKTAETELDVVEGMQFDRGYLSPYFITNADKMEVQLEEPLILLFEKKLSSLQPLLPVLEAVVQSGRPLLI 249

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_CAUCN (60 kDa chaperonin OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=groL PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.066e-33
Identity = 68/112 (60.71%), Postives = 91/112 (81.25%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            ++T+ EIAQVGTISANG++E+GE+IAKAM+KVG EGVIT+ + KT   EL+VVEGM+ DRGY+SPYFITN    + +LE+PLIL+ EKK+S+L  ++ VLE  ++  RPLLI
Sbjct:  138 VTTNAEIAQVGTISANGDKEVGEMIAKAMDKVGNEGVITVEEAKTAETELDVVEGMQFDRGYLSPYFITNADKMEVQLEEPLILLFEKKLSSLQPLLPVLEAVVQSGRPLLI 249

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH603_RHIL3 (60 kDa chaperonin 3 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=groL3 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.066e-33
Identity = 67/112 (59.82%), Postives = 87/112 (77.68%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            IS + EIAQVGTISANG+ EIG  +A+AME+VG +GVIT+ + KT   ELEVVEGM+ DRGY+SPYF+TN    + E EDP IL+HEKK+SNL +++ VLE  ++  +PLLI
Sbjct:  138 ISNNSEIAQVGTISANGDAEIGRFLAEAMERVGNDGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNADKMRVEFEDPYILIHEKKLSNLQSMLPVLEAVVQSSKPLLI 249

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH603_BRASB (60 kDa chaperonin 3 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=groL3 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.066e-33
Identity = 66/112 (58.93%), Postives = 90/112 (80.36%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I++++EIAQVGTISANG+ EIG  +A+AM+KVG EGVIT+ + K+L  ELEVVEGM+ DRGY+SPYF+TN +  + ELEDP IL+HEKK+S L  ++ +LE  ++  +PLLI
Sbjct:  138 ITSNDEIAQVGTISANGDNEIGRFLAEAMQKVGNEGVITVEEAKSLDTELEVVEGMQFDRGYVSPYFVTNSEKMRVELEDPYILIHEKKLSGLQTMLPLLEAVVQSGKPLLI 249

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_SPHWW (60 kDa chaperonin OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=groL PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.392e-33
Identity = 67/112 (59.82%), Postives = 90/112 (80.36%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            ++ S E+AQVG ISANG++E+GE IA+AM+KVGKEGVIT+ + K L  EL+VVEGM+ DRGY+SPYFITN +  + EL DP IL+HEKK+SNL +++ +LE  ++  RPLLI
Sbjct:  138 VAGSNEVAQVGIISANGDKEVGEKIAEAMDKVGKEGVITVEEAKGLEFELDVVEGMQFDRGYLSPYFITNPEKMQVELTDPYILIHEKKLSNLQSILPILEAVVQSGRPLLI 249

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_DROME (60 kDa heat shock protein, mitochondrial OS=Drosophila melanogaster GN=Hsp60 PE=1 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 1.392e-33
Identity = 68/112 (60.71%), Postives = 92/112 (82.14%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            +ST EEIAQV TISANG++ IG LI++AM+KVG++GVIT+ DGKTL +ELEV+EGMK DRGYISPYFI + K  K E +D L+L+ EKKIS++ +++  LELA  +++PL+I
Sbjct:  158 VSTPEEIAQVATISANGDQAIGNLISEAMKKVGRDGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINSSKGAKVEFQDALLLLSEKKISSVQSIIPALELANAQRKPLVI 269

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH604_RHIME (60 kDa chaperonin 4 OS=Rhizobium meliloti GN=groL4 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.392e-33
Identity = 69/112 (61.61%), Postives = 90/112 (80.36%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I+TS+E+AQVGTISANGE++IG  IA+AM+KVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYF+TN +    +LED  IL+HEKK+SNL A++ VLE  ++  +PLLI
Sbjct:  138 INTSDEVAQVGTISANGEKQIGLDIAEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDAFILLHEKKLSNLQAMLPVLEAVVQTGKPLLI 249

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH601_RHIME (60 kDa chaperonin 1 OS=Rhizobium meliloti GN=groL1 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 1.392e-33
Identity = 69/112 (61.61%), Postives = 90/112 (80.36%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I+TS+E+AQVGTISANGE++IG  IA+AM+KVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYF+TN +    +LED  IL+HEKK+SNL A++ VLE  ++  +PLLI
Sbjct:  138 INTSDEVAQVGTISANGEKQIGLDIAEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDAFILLHEKKLSNLQAMLPVLEAVVQTGKPLLI 249

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH601_RHIEC (60 kDa chaperonin 1 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL1 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.392e-33
Identity = 69/112 (61.61%), Postives = 90/112 (80.36%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I+TSEE+AQVGTISANGER++G  IA+AM+KVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYF+TN +    +LED  IL+HEKK+SNL +++ VLE  ++  +PLLI
Sbjct:  138 INTSEEVAQVGTISANGERQVGLDIAEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMIADLEDVFILLHEKKLSNLQSMLPVLEAVVQTGKPLLI 249

The following BLAST results are available for this feature:

BLAST of DN618194 vs. ExPASy Swiss-Prot

BLAST of DN618194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
HSP60_PARBA	1.066e-33	62.50	Heat shock protein 60, mitochondrial OS=Paracoccid...	[more]
CH60_CAUCR	1.066e-33	60.71	60 kDa chaperonin OS=Caulobacter crescentus GN=gro...	[more]
CH60_CAUCN	1.066e-33	60.71	60 kDa chaperonin OS=Caulobacter crescentus (strai...	[more]
CH603_RHIL3	1.066e-33	59.82	60 kDa chaperonin 3 OS=Rhizobium leguminosarum bv....	[more]
CH603_BRASB	1.066e-33	58.93	60 kDa chaperonin 3 OS=Bradyrhizobium sp. (strain ...	[more]
CH60_SPHWW	1.392e-33	59.82	60 kDa chaperonin OS=Sphingomonas wittichii (strai...	[more]
CH60_DROME	1.392e-33	60.71	60 kDa heat shock protein, mitochondrial OS=Drosop...	[more]
CH604_RHIME	1.392e-33	61.61	60 kDa chaperonin 4 OS=Rhizobium meliloti GN=groL4...	[more]
CH601_RHIME	1.392e-33	61.61	60 kDa chaperonin 1 OS=Rhizobium meliloti GN=groL1...	[more]
CH601_RHIEC	1.392e-33	61.61	60 kDa chaperonin 1 OS=Rhizobium etli (strain CFN ...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS11_02D20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002D20, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DN618194 ID=DN618194; Name=DN618194; organism=Citrus sinensis; type=EST; length=343bp
GAATGATCAGCACATCTGAGGAGATAGCACAGGTGGGGACAATATCAGCA
AATGGAGAGAGAGAAATTGGCGAGTTAATTGCAAAGGCCATGGAGAAGGT
CGGCAAAGAAGGAGTAATCACCATACACGATGGGAAGACATTATATAATG
AGTTGGAAGTTGTTGAAGGAATGAAGCTTGACAGGGGTTATATATCTCCT
TATTTCATAACCAACCAGAAAAATCAAAAATGTGAATTAGAAGATCCTCT
CATTCTTGTCCACGAGAAGAAAATCTCAAATCTAACTGCTGTTGTGAGGG
TATTAGAGCTGGCATTGAAGAGACAAAGGCCCTTATTGATTGT