DN618194

Overview
NameDN618194
Unique NameDN618194
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH601_BRASO (60 kDa chaperonin 1 OS=Bradyrhizobium sp. (strain ORS278) GN=groL1 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.392e-33
Identity = 66/112 (58.93%), Postives = 90/112 (80.36%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I++++EIAQVGTISANG+ EIG  +A+AM+KVG EGVIT+ + K+L  ELEVVEGM+ DRGY+SPYF+TN +  + ELEDP IL+HEKK+S L  ++ +LE  ++  +PLLI
Sbjct:  138 ITSNDEIAQVGTISANGDSEIGRFLAEAMQKVGNEGVITVEEAKSLDTELEVVEGMQFDRGYVSPYFVTNSEKMRVELEDPYILIHEKKLSGLQTMLPLLEAVVQSGKPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_HYPNA (60 kDa chaperonin OS=Hyphomonas neptunium (strain ATCC 15444) GN=groL PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.818e-33
Identity = 70/112 (62.50%), Postives = 88/112 (78.57%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            + T+EEIAQVGTISANGE EIG++IA+AM KVG EGVIT+ + K L  EL+VVEGM+ DRGYISPYFITN      ELED LIL+HE K+S+L  ++ +LE  ++ Q+PLLI
Sbjct:  138 VKTNEEIAQVGTISANGETEIGQMIAEAMAKVGNEGVITVEEAKALETELDVVEGMQFDRGYISPYFITNPDKMIVELEDVLILLHESKLSSLQPLLPILESVVQSQKPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_AGRT5 (60 kDa chaperonin OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=groL PE=3 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 1.818e-33
Identity = 69/112 (61.61%), Postives = 90/112 (80.36%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I+TSEE+AQVGTISANGER+IG  IA+AM++VG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYF+TN +    +LED  IL+HEKK+SNL A++ VLE  ++  +PL+I
Sbjct:  138 INTSEEVAQVGTISANGERQIGLDIAEAMQRVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDAYILLHEKKLSNLQAMLPVLEAVVQTGKPLVI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH602_SPHAL (60 kDa chaperonin 2 OS=Sphingopyxis alaskensis GN=groL2 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.818e-33
Identity = 66/112 (58.93%), Postives = 89/112 (79.46%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            +S + EIAQV TISANG+ E+G ++A+AM+KVG EGVIT+ + K+L  ELE VEGM+ DRGY+SPYFITN +  K EL+DP IL+HEKK+SNL A++ +LE  ++  +PLLI
Sbjct:  138 VSANSEIAQVATISANGDEEVGRILAEAMDKVGNEGVITVEEAKSLATELETVEGMQFDRGYLSPYFITNAEKLKVELDDPYILIHEKKLSNLQAMLPLLEAVVQSGKPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH602_SINMW (60 kDa chaperonin 2 OS=Sinorhizobium medicae (strain WSM419) GN=groL2 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.818e-33
Identity = 69/112 (61.61%), Postives = 88/112 (78.57%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            +S + EIAQV TISANG+ EIG  +A+AMEKVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYFITNQ+  + ELED  IL+HEKK+SNL A++ +LE  ++  +PLLI
Sbjct:  138 VSKNAEIAQVATISANGDAEIGRYLAEAMEKVGNEGVITVEEAKTAEIELEVVEGMQFDRGYLSPYFITNQEKMRVELEDAYILLHEKKLSNLQAMIPILESVIQSGKPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH602_RHORT (60 kDa chaperonin 2 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=groL2 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.818e-33
Identity = 68/112 (60.71%), Postives = 88/112 (78.57%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I TS E+AQVGTISANG+ E+G++IA AMEKVG EGVIT+ + K L  EL+VVEGM+ DRGY+SPYF+TN +    +LE+P IL+HEKK+S L A++ VLE  ++  RPLLI
Sbjct:  138 IKTSAEVAQVGTISANGDEEVGKIIATAMEKVGNEGVITVEEAKGLDTELDVVEGMQFDRGYLSPYFVTNAEKMVADLENPYILLHEKKLSGLQALLPVLEAVVQSSRPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH602_RHIME (60 kDa chaperonin 2 OS=Rhizobium meliloti GN=groL2 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 1.818e-33
Identity = 69/112 (61.61%), Postives = 88/112 (78.57%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            +S + EIAQV TISANG+ EIG  +A+AMEKVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYFITNQ+  + ELED  IL+HEKK+SNL A++ +LE  ++  +PLLI
Sbjct:  138 VSKNAEIAQVATISANGDAEIGRYLAEAMEKVGNEGVITVEEAKTAEIELEVVEGMEFDRGYLSPYFITNQEKMRVELEDAYILLHEKKLSNLQAMIPILESVIQSGKPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH601_SINMW (60 kDa chaperonin 1 OS=Sinorhizobium medicae (strain WSM419) GN=groL1 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.818e-33
Identity = 69/112 (61.61%), Postives = 90/112 (80.36%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I+TS+E+AQVGTISANGE++IG  IA+AM+KVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYF+TN +    +LED  IL+HEKK+SNL A++ VLE  ++  +PLLI
Sbjct:  138 INTSDEVAQVGTISANGEKQIGLDIAEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDAYILLHEKKLSNLQAMLPVLEAVVQTGKPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: HSP60_AJECA (Heat shock protein 60, mitochondrial OS=Ajellomyces capsulata GN=HSP60 PE=3 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 2.374e-33
Identity = 69/112 (61.61%), Postives = 89/112 (79.46%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I+T+EEIAQV TISANG+  +G+LI+ AMEKVGKEGVIT+ DGKT+ +ELEV EGM+ DRGY+SPYFIT+ K QK E E PLI++ EKKIS +  ++  LE +   +RPL+I
Sbjct:  175 ITTTEEIAQVATISANGDTHVGKLISNAMEKVGKEGVITVKDGKTIEDELEVTEGMRFDRGYVSPYFITDTKAQKVEFEKPLIVLSEKKISAVQDIIPALEASTTLRRPLVI 286          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_AZOSE (60 kDa chaperonin OS=Azoarcus sp. (strain EbN1) GN=groL PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.374e-33
Identity = 70/111 (63.06%), Postives = 89/111 (80.18%), Query Frame = 3
Query:    9 STSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            ST++EIAQVG+ISAN + +IGE+IAK+M+KVGKEGVIT+ DGK+L NEL+VVEGM+ DRGY+SPYFI N   Q   LE+P IL+ +KKISN+  ++ VLE   K  RPLLI
Sbjct:  139 STNKEIAQVGSISANSDADIGEIIAKSMDKVGKEGVITVEDGKSLQNELDVVEGMQFDRGYLSPYFINNPDKQVAILENPFILLFDKKISNIRDLLPVLEQVAKAGRPLLI 249          
The following BLAST results are available for this feature:
BLAST of DN618194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_BRASO1.392e-3358.9360 kDa chaperonin 1 OS=Bradyrhizobium sp. (strain ... [more]
CH60_HYPNA1.818e-3362.5060 kDa chaperonin OS=Hyphomonas neptunium (strain ... [more]
CH60_AGRT51.818e-3361.6160 kDa chaperonin OS=Agrobacterium tumefaciens (st... [more]
CH602_SPHAL1.818e-3358.9360 kDa chaperonin 2 OS=Sphingopyxis alaskensis GN=... [more]
CH602_SINMW1.818e-3361.6160 kDa chaperonin 2 OS=Sinorhizobium medicae (stra... [more]
CH602_RHORT1.818e-3360.7160 kDa chaperonin 2 OS=Rhodospirillum rubrum (stra... [more]
CH602_RHIME1.818e-3361.6160 kDa chaperonin 2 OS=Rhizobium meliloti GN=groL2... [more]
CH601_SINMW1.818e-3361.6160 kDa chaperonin 1 OS=Sinorhizobium medicae (stra... [more]
HSP60_AJECA2.374e-3361.61Heat shock protein 60, mitochondrial OS=Ajellomyce... [more]
CH60_AZOSE2.374e-3363.0660 kDa chaperonin OS=Azoarcus sp. (strain EbN1) GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02D20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618194 ID=DN618194; Name=DN618194; organism=Citrus sinensis; type=EST; length=343bp
GAATGATCAGCACATCTGAGGAGATAGCACAGGTGGGGACAATATCAGCA
AATGGAGAGAGAGAAATTGGCGAGTTAATTGCAAAGGCCATGGAGAAGGT
CGGCAAAGAAGGAGTAATCACCATACACGATGGGAAGACATTATATAATG
AGTTGGAAGTTGTTGAAGGAATGAAGCTTGACAGGGGTTATATATCTCCT
TATTTCATAACCAACCAGAAAAATCAAAAATGTGAATTAGAAGATCCTCT
CATTCTTGTCCACGAGAAGAAAATCTCAAATCTAACTGCTGTTGTGAGGG
TATTAGAGCTGGCATTGAAGAGACAAAGGCCCTTATTGATTGT
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