DN618194 | Citrus Genome Database

Overview


Name	DN618194
Unique Name	DN618194
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	343

Libraries


Library Name	Type
Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_AGRVS (60 kDa chaperonin OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=groL PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.374e-33
Identity = 67/112 (59.82%), Postives = 90/112 (80.36%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            ISTSEE+AQVGTISANG+ ++G+ IA+AM+KVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYF+TN +    +LED  +L+HEKK+SNL A++ VLE  ++  +PL+I
Sbjct:  138 ISTSEEVAQVGTISANGDTQVGKDIAEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDAYVLLHEKKLSNLQAMLPVLEAVVQTGKPLVI 249

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH603_BURCM (60 kDa chaperonin 3 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=groL3 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.374e-33
Identity = 70/112 (62.50%), Postives = 89/112 (79.46%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            IST+ EIAQVG+ISAN +  IG++IA AMEKVGKEGVIT+ DGK+L NEL+VVEGM+ DRGY+SPYFI + + Q   L+D LIL+H+KKISN+  ++ VLE   K  +PLLI
Sbjct:  138 ISTNREIAQVGSISANADEAIGKIIADAMEKVGKEGVITVEDGKSLENELDVVEGMQFDRGYVSPYFINDPEKQAAYLDDALILLHDKKISNIRDLLPVLEATSKAGKPLLI 249

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH602_MESSB (60 kDa chaperonin 2 OS=Mesorhizobium sp. (strain BNC1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.374e-33
Identity = 65/112 (58.04%), Postives = 91/112 (81.25%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            ++ ++EIAQVGTISANG++EIG  +A+AMEKVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYFITNQ+  + EL++P +L+HEKK+++L  ++ VLE  ++  +PLLI
Sbjct:  138 VTKNDEIAQVGTISANGDQEIGRFLAQAMEKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFITNQEKMRVELDEPYLLIHEKKLASLQPLLPVLEAVVQSGKPLLI 249

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_RHILW (60 kDa chaperonin OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=groL PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.100e-33
Identity = 68/112 (60.71%), Postives = 90/112 (80.36%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            ISTSEE+AQVGTISANG++++G  IA+AM+KVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYF+TN +    +LED  IL+HEKK+SNL +++ VLE  ++  +PLLI
Sbjct:  138 ISTSEEVAQVGTISANGDKQVGLDIAEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMIADLEDVFILLHEKKLSNLQSMLPVLEAVVQTGKPLLI 249

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_RHILV (60 kDa chaperonin OS=Rhizobium leguminosarum bv. viciae GN=groL PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.100e-33
Identity = 68/112 (60.71%), Postives = 90/112 (80.36%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            ISTSEE+AQVGTISANG++++G  IA+AM+KVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYF+TN +    +LED  IL+HEKK+SNL +++ VLE  ++  +PLLI
Sbjct:  138 ISTSEEVAQVGTISANGDKQVGLDIAEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMIADLEDVFILLHEKKLSNLQSMLPVLEAVVQTGKPLLI 249

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_EUGGR (Chaperonin CPN60, mitochondrial OS=Euglena gracilis GN=HSP60 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.100e-33
Identity = 71/112 (63.39%), Postives = 85/112 (75.89%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I + EE+ QV TISANG+ EIG+LI  AMEKVGK GVIT+ DGKTL  ELEVVEGM LDRGYISPYF+TN K QK E+ED  IL+ +KK+S +  ++ VLE   K  RPL+I
Sbjct:  151 IVSKEEVTQVATISANGDVEIGQLIGHAMEKVGKAGVITVSDGKTLDTELEVVEGMSLDRGYISPYFVTNAKTQKVEIEDAFILLCQKKVSTIQQILPVLEHIAKANRPLVI 262

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_DICDI (60 kDa heat shock protein, mitochondrial OS=Dictyostelium discoideum GN=hspA PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.100e-33
Identity = 68/112 (60.71%), Postives = 90/112 (80.36%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            IS++EEI+QV TISANG++ IG LIA AMEK+GKEGVIT+ DGKTL +ELE++EGMK D+G+IS YFI + K QKCE +DP+ILV + KISN+  +V +LEL   + + L+I
Sbjct:  155 ISSTEEISQVATISANGDKVIGNLIANAMEKIGKEGVITVQDGKTLKDELEIIEGMKFDQGFISRYFINDAKEQKCEFDDPVILVVDGKISNVQQLVPILELVHSKHKKLVI 266

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_CHLL2 (60 kDa chaperonin OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=groL PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.100e-33
Identity = 67/112 (59.82%), Postives = 90/112 (80.36%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            IS  +EIAQVGTISAN + EIGELIA+AM+KVGK+GVIT+ + K +  EL+VVEGM+ DRGY+SPYF+TN +  + E+EDPLIL+H+KKI N+  ++ +LE + +  RPLLI
Sbjct:  138 ISGKKEIAQVGTISANNDPEIGELIAEAMDKVGKDGVITVEEAKGMDTELKVVEGMQFDRGYLSPYFVTNPETMEAEIEDPLILIHDKKIGNMKELLPILEKSAQSGRPLLI 249

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_BORPE (60 kDa chaperonin OS=Bordetella pertussis GN=groL PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.100e-33
Identity = 66/112 (58.93%), Postives = 90/112 (80.36%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            ++TS+EIAQVG+ISAN +  IG++IA AM+KVGKEGVIT+ DGK+L NEL+VVEGM+ DRGY+SPYFI + + Q   L+DP +L+++KK+SN+  ++ VLE   K  RPLLI
Sbjct:  138 VTTSKEIAQVGSISANSDASIGQIIADAMDKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINSPEKQVAALDDPYVLIYDKKVSNIRDLLPVLEQVAKSSRPLLI 249

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_BORPD (60 kDa chaperonin OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=groL PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.100e-33
Identity = 68/112 (60.71%), Postives = 88/112 (78.57%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            ++TS+EIAQVG+ISAN +  IG++IA AM+KVGKEGVIT+ DGK+L NEL+VVEGM+ DRGY+SPYFI N   Q   L+DP +L+ +KKISN+  ++ VLE   K  RPLLI
Sbjct:  138 VTTSKEIAQVGSISANSDESIGKIIADAMDKVGKEGVITVEDGKSLDNELDVVEGMQFDRGYLSPYFINNPDKQVAALDDPYVLIFDKKISNIRDLLPVLEQVAKSSRPLLI 249

The following BLAST results are available for this feature:

BLAST of DN618194 vs. ExPASy Swiss-Prot

BLAST of DN618194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CH60_AGRVS	2.374e-33	59.82	60 kDa chaperonin OS=Agrobacterium vitis (strain S...	[more]
CH603_BURCM	2.374e-33	62.50	60 kDa chaperonin 3 OS=Burkholderia ambifaria (str...	[more]
CH602_MESSB	2.374e-33	58.04	60 kDa chaperonin 2 OS=Mesorhizobium sp. (strain B...	[more]
CH60_RHILW	3.100e-33	60.71	60 kDa chaperonin OS=Rhizobium leguminosarum bv. t...	[more]
CH60_RHILV	3.100e-33	60.71	60 kDa chaperonin OS=Rhizobium leguminosarum bv. v...	[more]
CH60_EUGGR	3.100e-33	63.39	Chaperonin CPN60, mitochondrial OS=Euglena gracili...	[more]
CH60_DICDI	3.100e-33	60.71	60 kDa heat shock protein, mitochondrial OS=Dictyo...	[more]
CH60_CHLL2	3.100e-33	59.82	60 kDa chaperonin OS=Chlorobium limicola (strain D...	[more]
CH60_BORPE	3.100e-33	58.93	60 kDa chaperonin OS=Bordetella pertussis GN=groL ...	[more]
CH60_BORPD	3.100e-33	60.71	60 kDa chaperonin OS=Bordetella petrii (strain ATC...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS11_02D20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002D20, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DN618194 ID=DN618194; Name=DN618194; organism=Citrus sinensis; type=EST; length=343bp
GAATGATCAGCACATCTGAGGAGATAGCACAGGTGGGGACAATATCAGCA
AATGGAGAGAGAGAAATTGGCGAGTTAATTGCAAAGGCCATGGAGAAGGT
CGGCAAAGAAGGAGTAATCACCATACACGATGGGAAGACATTATATAATG
AGTTGGAAGTTGTTGAAGGAATGAAGCTTGACAGGGGTTATATATCTCCT
TATTTCATAACCAACCAGAAAAATCAAAAATGTGAATTAGAAGATCCTCT
CATTCTTGTCCACGAGAAGAAAATCTCAAATCTAACTGCTGTTGTGAGGG
TATTAGAGCTGGCATTGAAGAGACAAAGGCCCTTATTGATTGT