DN618194

Overview
NameDN618194
Unique NameDN618194
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_CAUSK (60 kDa chaperonin OS=Caulobacter sp. (strain K31) GN=groL PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.049e-33
Identity = 66/112 (58.93%), Postives = 91/112 (81.25%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            ++T+ EIAQVGTISANG++++GE+IAKAM+KVG EGVIT+ + KT   EL+VVEGM+ DRGY+SPYFITN    + +LE+PLIL+ EKK+S+L  ++ VLE  ++  RPL+I
Sbjct:  138 VTTNNEIAQVGTISANGDKDVGEMIAKAMDKVGNEGVITVEEAKTAETELDVVEGMQFDRGYLSPYFITNADKMEVQLEEPLILLFEKKLSSLQPLLPVLEAVVQSGRPLVI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_BEII9 (60 kDa chaperonin OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=groL PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.049e-33
Identity = 65/112 (58.04%), Postives = 92/112 (82.14%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            +++++EIAQVGTISANG++ +G++I+ AM+KVG EGVIT+ + K+L  EL+VVEGM+ DRGY+SPYFITN +    ELEDP ILVHEKK+S+L A++ VLE  ++  +PL+I
Sbjct:  138 VTSNDEIAQVGTISANGDKSVGDMISTAMQKVGNEGVITVEEAKSLETELDVVEGMQFDRGYLSPYFITNAEKMIAELEDPYILVHEKKLSSLQAMLPVLEAVVQTGKPLVI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH605_SINMW (60 kDa chaperonin 5 OS=Sinorhizobium medicae (strain WSM419) GN=groL5 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.049e-33
Identity = 68/112 (60.71%), Postives = 90/112 (80.36%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I+TS+E+AQVGTISANGE++IG  IA+AM+KVG EGVIT+ + KT   ELEVV+GM+ DRGY+SPYF+TN +    +LED  IL+HEKK+SNL A++ VLE  ++  +PLLI
Sbjct:  138 INTSDEVAQVGTISANGEKQIGLDIAEAMQKVGNEGVITVEEAKTAETELEVVDGMQFDRGYLSPYFVTNPEKMVADLEDAYILLHEKKLSNLQAMLPVLEAVVQTGKPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH603_RHILO (60 kDa chaperonin 3 OS=Rhizobium loti GN=groL3 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.049e-33
Identity = 66/112 (58.93%), Postives = 87/112 (77.68%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I TSEE+AQVGTI+ NG+  +G++IA+AM+KVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYF+TN      +LED  IL+HEKK+SNL A++ VLE  ++  +PLLI
Sbjct:  138 IKTSEEVAQVGTIAGNGDESVGKMIAEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNADKMVADLEDAYILLHEKKLSNLQAMLPVLEAVVQTSKPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_DECAR (60 kDa chaperonin OS=Dechloromonas aromatica (strain RCB) GN=groL PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.289e-33
Identity = 68/111 (61.26%), Postives = 89/111 (80.18%), Query Frame = 3
Query:    9 STSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            +T++EIAQVG+ISAN + +IGE+IA AMEKVGKEGVIT+ DGK+L NEL+VVEGM+ DRGY+SPYFI N   Q+  LE+P +L+ +KKISN+  ++ +LE   K  RPLLI
Sbjct:  139 TTTKEIAQVGSISANSDSDIGEIIANAMEKVGKEGVITVEDGKSLANELDVVEGMQFDRGYLSPYFINNGDKQQALLENPFVLLFDKKISNIRDLLPILEQVAKAGRPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_CHLCH (60 kDa chaperonin OS=Chlorobium chlorochromatii (strain CaD3) GN=groL PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.289e-33
Identity = 67/112 (59.82%), Postives = 91/112 (81.25%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            IS+ +EIAQVGTISAN + EIGELIA+AMEKVGK+GVIT+ + K +  EL+VVEGM+ DRGY+SPYF+TN    + EL++PLIL+++KKISN+  ++ +LE + +  RPLLI
Sbjct:  138 ISSKKEIAQVGTISANNDPEIGELIAEAMEKVGKDGVITVEEAKGMETELKVVEGMQFDRGYLSPYFVTNSDTMEAELDNPLILIYDKKISNMKELLPILEKSAQSGRPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH601_RHORT (60 kDa chaperonin 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=groL1 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.289e-33
Identity = 66/112 (58.93%), Postives = 90/112 (80.36%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I+T++EIAQVGTISANG+ E+G++IA+AM+KVG EGVIT+ + K L  EL+VVEGM+ DRGY+SPYF+TN +    +LE+P IL+HEKK+S L  ++ VLE  ++  RPLLI
Sbjct:  138 IATNDEIAQVGTISANGDEEVGKIIARAMDKVGHEGVITVEEAKGLDTELDVVEGMQFDRGYLSPYFVTNAEKMVADLENPYILIHEKKLSGLQPLLPVLEAVVQSGRPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_RICTY (60 kDa chaperonin OS=Rickettsia typhi GN=groL PE=3 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 6.907e-33
Identity = 67/112 (59.82%), Postives = 89/112 (79.46%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I++ EEIAQVGTIS+NG++EIGE IAKAME+VGKEGVIT+ + K    ++EVV+GM  DRGY+SPYF+TN +    ELE+P IL+ EKK+SNL  ++ +LE  ++ QRPLLI
Sbjct:  138 INSQEEIAQVGTISSNGDKEIGEKIAKAMEEVGKEGVITVEEAKNFSFDVEVVKGMMFDRGYLSPYFVTNSEKMVAELENPFILLFEKKLSNLQPMLPILEAVVQSQRPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_RICRS (60 kDa chaperonin OS=Rickettsia rickettsii (strain Sheila Smith) GN=groL PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 6.907e-33
Identity = 67/112 (59.82%), Postives = 89/112 (79.46%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I++ EEIAQVGTIS+NG++EIGE IAKAME+VGKEGVIT+ + K    ++EVV+GM  DRGY+SPYF+TN +    ELE+P IL+ EKK+SNL  ++ +LE  ++ QRPLLI
Sbjct:  138 INSQEEIAQVGTISSNGDKEIGEKIAKAMEEVGKEGVITVEEAKNFSFDVEVVKGMMFDRGYLSPYFVTNSEKMVAELENPFILLFEKKLSNLQPMLPILEAVVQSQRPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_RICRO (60 kDa chaperonin OS=Rickettsia rickettsii (strain Iowa) GN=groL PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 6.907e-33
Identity = 67/112 (59.82%), Postives = 89/112 (79.46%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I++ EEIAQVGTIS+NG++EIGE IAKAME+VGKEGVIT+ + K    ++EVV+GM  DRGY+SPYF+TN +    ELE+P IL+ EKK+SNL  ++ +LE  ++ QRPLLI
Sbjct:  138 INSQEEIAQVGTISSNGDKEIGEKIAKAMEEVGKEGVITVEEAKNFSFDVEVVKGMMFDRGYLSPYFVTNSEKMVAELENPFILLFEKKLSNLQPMLPILEAVVQSQRPLLI 249          
The following BLAST results are available for this feature:
BLAST of DN618194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_CAUSK4.049e-3358.9360 kDa chaperonin OS=Caulobacter sp. (strain K31) ... [more]
CH60_BEII94.049e-3358.0460 kDa chaperonin OS=Beijerinckia indica subsp. in... [more]
CH605_SINMW4.049e-3360.7160 kDa chaperonin 5 OS=Sinorhizobium medicae (stra... [more]
CH603_RHILO4.049e-3358.9360 kDa chaperonin 3 OS=Rhizobium loti GN=groL3 PE=... [more]
CH60_DECAR5.289e-3361.2660 kDa chaperonin OS=Dechloromonas aromatica (stra... [more]
CH60_CHLCH5.289e-3359.8260 kDa chaperonin OS=Chlorobium chlorochromatii (s... [more]
CH601_RHORT5.289e-3358.9360 kDa chaperonin 1 OS=Rhodospirillum rubrum (stra... [more]
CH60_RICTY6.907e-3359.8260 kDa chaperonin OS=Rickettsia typhi GN=groL PE=3... [more]
CH60_RICRS6.907e-3359.8260 kDa chaperonin OS=Rickettsia rickettsii (strain... [more]
CH60_RICRO6.907e-3359.8260 kDa chaperonin OS=Rickettsia rickettsii (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02D20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618194 ID=DN618194; Name=DN618194; organism=Citrus sinensis; type=EST; length=343bp
GAATGATCAGCACATCTGAGGAGATAGCACAGGTGGGGACAATATCAGCA
AATGGAGAGAGAGAAATTGGCGAGTTAATTGCAAAGGCCATGGAGAAGGT
CGGCAAAGAAGGAGTAATCACCATACACGATGGGAAGACATTATATAATG
AGTTGGAAGTTGTTGAAGGAATGAAGCTTGACAGGGGTTATATATCTCCT
TATTTCATAACCAACCAGAAAAATCAAAAATGTGAATTAGAAGATCCTCT
CATTCTTGTCCACGAGAAGAAAATCTCAAATCTAACTGCTGTTGTGAGGG
TATTAGAGCTGGCATTGAAGAGACAAAGGCCCTTATTGATTGT
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