DN618163

Overview
NameDN618163
Unique NameDN618163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length544
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618163 vs. ExPASy Swiss-Prot
Match: WRK16_ARATH (Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.147e-15
Identity = 42/74 (56.76%), Postives = 50/74 (67.57%), Query Frame = 3
Query:  321 SSPKKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIRGSPYPRGYYRCSSSKGCPARKQVERS 542
            S  +++   +KRV+ V  +   GSR        SD W WRKYGQKPI+ SPYPR YYRC+SSKGC ARKQVERS
Sbjct: 1157 SKSRRKNNKEKRVVCVVDR---GSR-------SSDLWVWRKYGQKPIKSSPYPRSYYRCASSKGCFARKQVERS 1220          
BLAST of DN618163 vs. ExPASy Swiss-Prot
Match: WRK74_ARATH (Probable WRKY transcription factor 74 OS=Arabidopsis thaliana GN=WRKY74 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.499e-15
Identity = 39/70 (55.71%), Postives = 49/70 (70.00%), Query Frame = 3
Query:  330 KKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIRGSPYPRGYYRCSSSKGCPARKQVER 539
            KKR+   KR I VP    + + +      P D ++WRKYGQKPI+GSP+PRGYY+CSS +GCPARK VER
Sbjct:  238 KKRKLRVKRSIKVPAISNKIADI------PPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVER 301          
BLAST of DN618163 vs. ExPASy Swiss-Prot
Match: WRK39_ARATH (Probable WRKY transcription factor 39 OS=Arabidopsis thaliana GN=WRKY39 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.499e-15
Identity = 39/70 (55.71%), Postives = 49/70 (70.00%), Query Frame = 3
Query:  330 KKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIRGSPYPRGYYRCSSSKGCPARKQVER 539
            KKR+   KR I VP    + + +      P D ++WRKYGQKPI+GSP+PRGYY+CSS +GCPARK VER
Sbjct:  238 KKRKLRVKRSIKVPAISNKIADI------PPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVER 301          
BLAST of DN618163 vs. ExPASy Swiss-Prot
Match: WRKY1_MAIZE (Protein WRKY1 OS=Zea mays PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.556e-15
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 3
Query:  330 KKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIRGSPYPRGYYRCSSSKGCPARKQVER 539
            KKR+   +R I VP    + + +      P+D ++WRKYGQKPI+GSP+PRGYY+CSS +GCPARK VER
Sbjct:  308 KKRKLRIRRSIKVPAISNKVADI------PADEFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVER 371          
BLAST of DN618163 vs. ExPASy Swiss-Prot
Match: WRK17_ARATH (Probable WRKY transcription factor 17 OS=Arabidopsis thaliana GN=WRKY17 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 2.556e-15
Identity = 36/71 (50.70%), Postives = 49/71 (69.01%), Query Frame = 3
Query:  330 KKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIRGSPYPRGYYRCSSSKGCPARKQVERS 542
            K R+   KR + VP    + + +      P D ++WRKYGQKPI+GSP+PRGYY+CS+ +GCPARK VER+
Sbjct:  219 KSRKNRMKRTVRVPAVSAKIADI------PPDEYSWRKYGQKPIKGSPHPRGYYKCSTFRGCPARKHVERA 283          
BLAST of DN618163 vs. ExPASy Swiss-Prot
Match: WRK11_ARATH (Probable WRKY transcription factor 11 OS=Arabidopsis thaliana GN=WRKY11 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 3.339e-15
Identity = 36/71 (50.70%), Postives = 49/71 (69.01%), Query Frame = 3
Query:  330 KKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIRGSPYPRGYYRCSSSKGCPARKQVERS 542
            K R+   KR + VP    + + +      P D ++WRKYGQKPI+GSP+PRGYY+CS+ +GCPARK VER+
Sbjct:  222 KSRKNRMKRTVRVPAISAKIADI------PPDEYSWRKYGQKPIKGSPHPRGYYKCSTFRGCPARKHVERA 286          
BLAST of DN618163 vs. ExPASy Swiss-Prot
Match: WRKY1_ARATH (WRKY transcription factor 1 OS=Arabidopsis thaliana GN=WRKY1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.516e-11
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 3
Query:  420 SDSWAWRKYGQKPIRGSPYPRGYYRCSSSKGCPARKQVERS 542
            +D + WRKYGQK ++GSPYPR YYRC SS GCP +K VERS
Sbjct:  307 NDGYRWRKYGQKSVKGSPYPRSYYRC-SSPGCPVKKHVERS 346          
The following BLAST results are available for this feature:
BLAST of DN618163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
WRK16_ARATH1.147e-1556.76Probable WRKY transcription factor 16 OS=Arabidops... [more]
WRK74_ARATH1.499e-1555.71Probable WRKY transcription factor 74 OS=Arabidops... [more]
WRK39_ARATH1.499e-1555.71Probable WRKY transcription factor 39 OS=Arabidops... [more]
WRKY1_MAIZE2.556e-1554.29Protein WRKY1 OS=Zea mays PE=1 SV=1[more]
WRK17_ARATH2.556e-1550.70Probable WRKY transcription factor 17 OS=Arabidops... [more]
WRK11_ARATH3.339e-1550.70Probable WRKY transcription factor 11 OS=Arabidops... [more]
WRKY1_ARATH6.516e-1168.29WRKY transcription factor 1 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02D03_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618163 ID=DN618163; Name=DN618163; organism=Citrus sinensis; type=EST; length=544bp
CCCATTTTCCATTTCGTCTTCCGCTCATCATCAAACATTAATCTCCGCCA
CGTTCCCCTTTCTCTCTCTATCACTCTTTTTAATTATACACACACACATA
TATATATATATAATTTAGGATACATAGGACGTCGCCGGGCGGCGATCAAC
GTTGAAGATAAGTATAGAGTAGAGGGGTTTCAGGTATGGACGGCAGGTTC
AACAGCAACAGCAACCCATTTACTGGTGAGCAAGAAGAAAATGATACGAC
GCCGGAGAACAGCTCCGAATCCCCACCTTCTTCTTCCACTTATAACGACA
TGATGAAGATGACCTCTACTTCTTCCCCTAAGAAAAGGCGAGCTATGCAG
AAGAGAGTAATATCAGTGCCAATCAAGGAGGTGGAGGGATCAAGACTGAA
AGGGGAGAGCGCCCCACCCTCCGATTCCTGGGCTTGGCGAAAATACGGCC
AGAAACCCATCAGAGGCTCTCCTTATCCGAGAGGATATTACAGATGTAGC
AGCTCGAAAGGCTGCCCGGCAAGAAAACAAGTGGAGCGAAGCAG
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