DN618158

Overview
NameDN618158
Unique NameDN618158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length496
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN618158_ssr283 microsatellite DN618158_ssr283:283..306. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1840 contig Csv1_Contig1840:1403..1892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN618158 vs. ExPASy Swiss-Prot
Match: SAHH_CHRVO (Adenosylhomocysteinase OS=Chromobacterium violaceum GN=ahcY PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.059e-11
Identity = 35/55 (63.64%), Postives = 37/55 (67.27%), Query Frame = -3
Query:  315 KYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 479
            KYEKKVYVLPKHLDEKV           LT L+ +QA YISV   GPYKP HYRY
Sbjct:  412 KYEKKVYVLPKHLDEKVARLHLARIGARLTELSDQQAAYISVPKQGPYKPDHYRY 466          
BLAST of DN618158 vs. ExPASy Swiss-Prot
Match: SAHH_PROMP (Adenosylhomocysteinase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=ahcY PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.383e-11
Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = -3
Query:  315 KYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 479
            +Y K+VYVLPKHLDE V           LT+LTK+QADYI+VS +GPYKP  YRY
Sbjct:  418 EYSKEVYVLPKHLDEMVARLHLDKIGAKLTKLTKDQADYINVSVEGPYKPEQYRY 472          
BLAST of DN618158 vs. ExPASy Swiss-Prot
Match: SAHH_ZYMMO (Adenosylhomocysteinase OS=Zymomonas mobilis GN=ahcY PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.806e-11
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = -3
Query:  315 STGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 488
            +T KY+K VY+LPKHLDEKV           L++LT++QADYI V  +GP+KP HYRY
Sbjct:  407 NTDKYQKDVYMLPKHLDEKVAALHLPKLGVHLSKLTQKQADYIGVPVNGPFKPDHYRY 464          
BLAST of DN618158 vs. ExPASy Swiss-Prot
Match: SAHH_RHOPT (Adenosylhomocysteinase OS=Rhodopseudomonas palustris (strain TIE-1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.806e-11
Identity = 34/59 (57.63%), Postives = 39/59 (66.10%), Query Frame = -3
Query:  315 KSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 491
            ++ GKYEKKVYVLPK LDEKV           LT L K+QADYI V  +GP+K  HYRY
Sbjct:  411 QNQGKYEKKVYVLPKSLDEKVARLHLAKIGVKLTELRKDQADYIGVKVEGPFKADHYRY 469          
BLAST of DN618158 vs. ExPASy Swiss-Prot
Match: SAHH_PROM9 (Adenosylhomocysteinase OS=Prochlorococcus marinus (strain MIT 9312) GN=ahcY PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.806e-11
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = -3
Query:  315 KYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 479
            KY K+VYVLPKHLDE V           LT+LT+EQADYI+VS +GPYKP  YRY
Sbjct:  418 KYAKEVYVLPKHLDEMVARLHLDKIGAKLTKLTEEQADYINVSVEGPYKPELYRY 472          
BLAST of DN618158 vs. ExPASy Swiss-Prot
Match: SAHH_PROM3 (Adenosylhomocysteinase OS=Prochlorococcus marinus (strain MIT 9303) GN=ahcY PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.806e-11
Identity = 34/55 (61.82%), Postives = 37/55 (67.27%), Query Frame = -3
Query:  315 KYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 479
            KY  +VYVLPKHLDE V           LT LTK+QADYISV  +GPYKP HYRY
Sbjct:  422 KYADQVYVLPKHLDEMVARLHLEKIGARLTELTKQQADYISVPIEGPYKPDHYRY 476          
BLAST of DN618158 vs. ExPASy Swiss-Prot
Match: SAHH_RHOPA (Adenosylhomocysteinase OS=Rhodopseudomonas palustris GN=ahcY PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.359e-11
Identity = 34/59 (57.63%), Postives = 39/59 (66.10%), Query Frame = -3
Query:  315 KSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 491
            ++ GKYEKKVYVLPK LDEKV           LT L K+QADYI V  +GP+K  HYRY
Sbjct:  411 QNQGKYEKKVYVLPKTLDEKVARLHLAKIGVKLTELRKDQADYIGVKVEGPFKADHYRY 469          
BLAST of DN618158 vs. ExPASy Swiss-Prot
Match: SAHH_NOVAD (Adenosylhomocysteinase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=ahcY PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.359e-11
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = -3
Query:  315 KYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 479
            +Y+ +VYVLPKHLDEKV           LT+L+K+QADYI VS +GP+KP HYRY
Sbjct:  414 EYKNEVYVLPKHLDEKVAALHLEKLGVKLTKLSKKQADYIGVSQEGPFKPDHYRY 468          
BLAST of DN618158 vs. ExPASy Swiss-Prot
Match: SAHH_METCA (Adenosylhomocysteinase OS=Methylococcus capsulatus GN=ahcY PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.081e-11
Identity = 34/55 (61.82%), Postives = 36/55 (65.45%), Query Frame = -3
Query:  315 KYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 479
            KYE KVYVLPKHLDEKV           LT L+ EQA YI V  +GPYKP HYRY
Sbjct:  418 KYENKVYVLPKHLDEKVARLHLKKIGARLTELSDEQAAYIGVPKEGPYKPDHYRY 472          
BLAST of DN618158 vs. ExPASy Swiss-Prot
Match: SAHH_PROMM (Adenosylhomocysteinase OS=Prochlorococcus marinus (strain MIT 9313) GN=ahcY PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.024e-11
Identity = 33/55 (60.00%), Postives = 37/55 (67.27%), Query Frame = -3
Query:  315 KYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 479
            +Y  +VYVLPKHLDE V           LT LTK+QADYISV  +GPYKP HYRY
Sbjct:  422 QYADQVYVLPKHLDEMVARLHLEKIGARLTELTKQQADYISVPVEGPYKPDHYRY 476          
The following BLAST results are available for this feature:
BLAST of DN618158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
SAHH_CHRVO1.059e-1163.64Adenosylhomocysteinase OS=Chromobacterium violaceu... [more]
SAHH_PROMP1.383e-1160.00Adenosylhomocysteinase OS=Prochlorococcus marinus ... [more]
SAHH_ZYMMO1.806e-1155.17Adenosylhomocysteinase OS=Zymomonas mobilis GN=ahc... [more]
SAHH_RHOPT1.806e-1157.63Adenosylhomocysteinase OS=Rhodopseudomonas palustr... [more]
SAHH_PROM91.806e-1161.82Adenosylhomocysteinase OS=Prochlorococcus marinus ... [more]
SAHH_PROM31.806e-1161.82Adenosylhomocysteinase OS=Prochlorococcus marinus ... [more]
SAHH_RHOPA2.359e-1157.63Adenosylhomocysteinase OS=Rhodopseudomonas palustr... [more]
SAHH_NOVAD2.359e-1158.18Adenosylhomocysteinase OS=Novosphingobium aromatic... [more]
SAHH_METCA3.081e-1161.82Adenosylhomocysteinase OS=Methylococcus capsulatus... [more]
SAHH_PROMM4.024e-1160.00Adenosylhomocysteinase OS=Prochlorococcus marinus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02D01_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618158 ID=DN618158; Name=DN618158; organism=Citrus sinensis; type=EST; length=496bp
ATATTCCATTCAGTAAACAATAAAGGATAACAAGATGCAGCAAAGCAAGC
AAAACTTAAAACTGCACCAAATACAAAATAATCCAACACGGCCCCATCCA
AAACCTTATTCAAATCCCAAATGGTCTTCAATCAACGGAAACAAATCCGT
TTCTTTCCTCCAACTTTCCCACCACCCAAACACACACTACTACGAAATTT
AAACCTAACATCCTACTACAGATCATCATTGAAAACAATCAAGCCGGCCA
AATATTTTGTTTCTTTCCCTCAAAACATTCACTCTTCTTCTTCTTCTTCT
TCTTCTTCCACTTAGTACCTGTAGTGAAGAGGCTTGTAAGGACCATCGGC
GGACACACTGATGTAGTCAGCCTGCTCCTTGGTGAGCCTGGTGAGCTTAG
CTCCAAGTTTGCCAAGGTGAAGAGCAGCAACCTTTTCATCGAGGTGCTTG
GGCAGAACGTACACCTTCTTCTCGTACTTGCCGGTGCTCTTCTCCT
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