DN618158

Overview
NameDN618158
Unique NameDN618158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length496
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN618158_ssr283 microsatellite DN618158_ssr283:283..306. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1840 contig Csv1_Contig1840:1403..1892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN618158 vs. ExPASy Swiss-Prot
Match: SAHH_SYNS3 (Adenosylhomocysteinase OS=Synechococcus sp. (strain CC9311) GN=ahcY PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.864e-11
Identity = 32/55 (58.18%), Postives = 38/55 (69.09%), Query Frame = -3 
Query:  315 KYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 479
            +Y K+VYVLPKHLDE V           LT L+K+QADYI+V  +GPYKP HYRY
Sbjct:  422 EYGKEVYVLPKHLDEMVARLHLEKIGCKLTELSKDQADYINVPVEGPYKPDHYRY 476
[Close]
BLAST of DN618158 vs. ExPASy Swiss-Prot
Match: SAHH_SYNPX (Adenosylhomocysteinase OS=Synechococcus sp. (strain WH8102) GN=ahcY PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.864e-11
Identity = 32/55 (58.18%), Postives = 38/55 (69.09%), Query Frame = -3 
Query:  315 KYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 479
            +Y K+VYVLPKHLDE V           LT L+K+QADYI+V  +GPYKP HYRY
Sbjct:  422 EYGKEVYVLPKHLDEMVARLHLDRIGAKLTELSKDQADYINVPVEGPYKPDHYRY 476
[Close]
BLAST of DN618158 vs. ExPASy Swiss-Prot
Match: SAHH_SPHAL (Adenosylhomocysteinase OS=Sphingopyxis alaskensis GN=ahcY PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.965e-11
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = -3 
Query:  315 KYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 479
            +Y+  VYVLPKHLDEKV           LT+LT++QADYI V  +GP+KP HYRY
Sbjct:  418 QYQNDVYVLPKHLDEKVAALHLEKLGVKLTKLTQKQADYIGVPVEGPFKPDHYRY 472
[Close]
BLAST of DN618158 vs. ExPASy Swiss-Prot
Match: SAHH_MYCPA (Adenosylhomocysteinase OS=Mycobacterium paratuberculosis GN=ahcY PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.965e-11
Identity = 32/55 (58.18%), Postives = 37/55 (67.27%), Query Frame = -3 
Query:  315 KYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 479
            +Y+ +VY LPKHLDEKV           LT+LTKEQA+YI V  DGPYK  HYRY
Sbjct:  442 EYDNEVYRLPKHLDEKVARIHVEALGGELTKLTKEQAEYIGVDVDGPYKADHYRY 496
[Close]
BLAST of DN618158 vs. ExPASy Swiss-Prot
Match: SAHH_MESSB (Adenosylhomocysteinase OS=Mesorhizobium sp. (strain BNC1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.965e-11
Identity = 32/55 (58.18%), Postives = 38/55 (69.09%), Query Frame = -3 
Query:  315 KYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 479
            +YE KVYVLPKHLDEKV           LT+L+ EQA YI V+ +GP+KP HYRY
Sbjct:  411 QYENKVYVLPKHLDEKVARLHLAKLGANLTKLSPEQAAYIGVTPEGPFKPDHYRY 465
The following BLAST results are available for this feature:
BLAST of DN618158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
SAHH_SYNS36.864e-1158.18Adenosylhomocysteinase OS=Synechococcus sp. (strai... [more]
SAHH_SYNPX6.864e-1158.18Adenosylhomocysteinase OS=Synechococcus sp. (strai... [more]
SAHH_SPHAL8.965e-1156.36Adenosylhomocysteinase OS=Sphingopyxis alaskensis ... [more]
SAHH_MYCPA8.965e-1158.18Adenosylhomocysteinase OS=Mycobacterium paratuberc... [more]
SAHH_MESSB8.965e-1158.18Adenosylhomocysteinase OS=Mesorhizobium sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02D01_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618158 ID=DN618158; Name=DN618158; organism=Citrus sinensis; type=EST; length=496bp
ATATTCCATTCAGTAAACAATAAAGGATAACAAGATGCAGCAAAGCAAGC
AAAACTTAAAACTGCACCAAATACAAAATAATCCAACACGGCCCCATCCA
AAACCTTATTCAAATCCCAAATGGTCTTCAATCAACGGAAACAAATCCGT
TTCTTTCCTCCAACTTTCCCACCACCCAAACACACACTACTACGAAATTT
AAACCTAACATCCTACTACAGATCATCATTGAAAACAATCAAGCCGGCCA
AATATTTTGTTTCTTTCCCTCAAAACATTCACTCTTCTTCTTCTTCTTCT
TCTTCTTCCACTTAGTACCTGTAGTGAAGAGGCTTGTAAGGACCATCGGC
GGACACACTGATGTAGTCAGCCTGCTCCTTGGTGAGCCTGGTGAGCTTAG
CTCCAAGTTTGCCAAGGTGAAGAGCAGCAACCTTTTCATCGAGGTGCTTG
GGCAGAACGTACACCTTCTTCTCGTACTTGCCGGTGCTCTTCTCCT
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