DN618157

Overview
NameDN618157
Unique NameDN618157
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618157 vs. ExPASy Swiss-Prot
Match: GL24_ORYSJ (Germin-like protein 2-4 OS=Oryza sativa subsp. japonica GN=Os02g0532500 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.044e-14
Identity = 52/127 (40.94%), Postives = 62/127 (48.82%), Query Frame = 2
Query:  104 DPGHLQDVCV---AINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDY-APYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDPLNNTLIAKVL 472
            DP  +QD CV       P +   +    C+ P    A DF FSG+   GN +   G         Q PGL+TLG+S  R D  A  G  PPH HPRA+E  LVL G +Y GFV S      L AKVL
Sbjct:   24 DPDAVQDFCVPDAGRGRPVELAMLPAYPCRSPANLTAGDFAFSGVRAAGNFSPETGFAGVSVTPAQFPGLHTLGMSFARADLSAAGGVNPPHYHPRATETALVLAGRVYAGFVDS---GGRLFAKVL 147          
BLAST of DN618157 vs. ExPASy Swiss-Prot
Match: GL111_ORYSJ (Germin-like protein 11-1 OS=Oryza sativa subsp. japonica GN=Os11g0537300 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.669e-14
Identity = 48/131 (36.64%), Postives = 60/131 (45.80%), Query Frame = 2
Query:   35 MKVIQVLIGFXXXXXXXXXXXXTDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGF 427
            MK+  VL  +            +D   LQDVC      +  +F+NG FCK P    A DF    L   G+  N +          + PGLNTLGIS  R D A  G   PH HPRASE+  V  G++  GF
Sbjct:    1 MKLSTVLCCYLLLLGLFAPEIISDSPPLQDVCPMAPQGERKLFMNGFFCKSPSTIMASDFKTLLLNHAGDLDNMVRSSANIITATEFPGLNTLGISMARTDIAVSGAVLPHSHPRASEMMFVHSGSVVAGF 131          
BLAST of DN618157 vs. ExPASy Swiss-Prot
Match: GL814_ORYSJ (Germin-like protein 8-14 OS=Oryza sativa subsp. japonica GN=GER5 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.767e-14
Identity = 42/90 (46.67%), Postives = 54/90 (60.00%), Query Frame = 2
Query:  203 AEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDPLNNTLIAKVL 472
            A DF + GL   GNT+N +    T A V Q PG+N LGISA R+D A  G  P H HP ASE+  V +GT+  GF+TS   +NT+  + L
Sbjct:   50 AGDFAYHGLAAAGNTSNLIKAAVTPAFVGQFPGVNGLGISAARLDIAVGGVVPLHTHPAASELLFVTQGTVAAGFITSS--SNTVYTRTL 137          
BLAST of DN618157 vs. ExPASy Swiss-Prot
Match: GL813_ORYSJ (Germin-like protein 8-13 OS=Oryza sativa subsp. japonica GN=Os08g0459700 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.951e-13
Identity = 42/106 (39.62%), Postives = 53/106 (50.00%), Query Frame = 2
Query:  119 QDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTS 436
            QD CVA N P      +G  C+      A DF+   L +PG            A V+Q P +N LGISA R+D  P G  P H HP  SE+  VL+G L  GF++S
Sbjct:   29 QDFCVA-NLPLGADTPSGYQCRPAATVTAADFYSGALARPGILIRPFNTSLASAFVQQYPAVNGLGISASRVDILPGGVVPLHTHPAGSELLYVLDGALVAGFISS 133          
The following BLAST results are available for this feature:
BLAST of DN618157 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
GL24_ORYSJ2.044e-1440.94Germin-like protein 2-4 OS=Oryza sativa subsp. jap... [more]
GL111_ORYSJ2.669e-1436.64Germin-like protein 11-1 OS=Oryza sativa subsp. ja... [more]
GL814_ORYSJ7.767e-1446.67Germin-like protein 8-14 OS=Oryza sativa subsp. ja... [more]
GL813_ORYSJ2.951e-1339.62Germin-like protein 8-13 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02C24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618157 ID=DN618157; Name=DN618157; organism=Citrus sinensis; type=EST; length=472bp
GTTTGAGATAGGCACATCCTGTGACTTAATCACCATGAAGGTAATTCAAG
TTCTTATAGGTTTTGCCCTCTTGGCTTTGGCTTCTTCTTTGGCCTCTGCC
ACTGACCCTGGCCATCTTCAAGATGTCTGTGTAGCCATCAATGACCCCAA
GGATGGTGTGTTTGTGAATGGGAAGTTCTGCAAGGACCCCAAGCTTGCGA
GAGCAGAAGATTTCTTCTTCTCAGGGCTAGGCAAGCCTGGAAACACAGCA
AATCGACTTGGTGTTGATGAAACAGATGCAAATGTTGAGCAAATTCCAGG
ACTCAACACCCTTGGCATATCAGCATTCCGTATTGACTATGCACCATATG
GCCAAAGGCCACCTCACATTCACCCCCGTGCCAGCGAAATCTTCTTAGTC
CTGGAAGGAACTCTTTATGTCGGTTTTGTGACATCAGACCCACTGAATAA
CACACTCATCGCAAAAGTTCTA
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