DN618156

Overview
NameDN618156
Unique NameDN618156
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618156 vs. ExPASy Swiss-Prot
Match: GL11_ARATH (Germin-like protein subfamily 1 member 1 OS=Arabidopsis thaliana GN=GLP7 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 5.892e-20
Identity = 51/131 (38.93%), Postives = 80/131 (61.07%), Query Frame = -2
Query:  222 TDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAA-AYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLD 611
            T      +PGLNT+G++  R+D+   G  PPH+HPRASE+ + L+G L VGFV +   +  +  + L+ G+ FVFP+GLIHF +NI   ++A A S L+SQ PG   ++ + F + P    + L  A+ ++
Sbjct:   77 TVTTTANLPGLNTVGLTMARLDFGGSGVVPPHVHPRASEVTVCLDGVLLVGFVDT---SGRVFTQELHPGETFVFPKGLIHFLYNIDTVSSALAVSGLSSQNPGTQIVSLSSFISKPPFLVEVLKSAYDIN 204          
BLAST of DN618156 vs. ExPASy Swiss-Prot
Match: GL31_ORYSJ (Germin-like protein 3-1 OS=Oryza sativa subsp. japonica GN=Os03g0179000 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.005e-19
Identity = 52/132 (39.39%), Postives = 76/132 (57.58%), Query Frame = -2
Query:  198 IPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIG-KTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQ 590
            +PG N  G++  RID AP G  PPH HPRASE  LVL G++ VGF  +   +  L  ++L  G+ FVFP+ ++HF +N+     A   S LNSQ PG   +  + F   P +  + L KAF++  + V+ +Q
Sbjct:   91 LPGANAQGLAMARIDLAPGGMAPPHSHPRASEAALVLSGSVLVGFADT---SYRLYTQLLRAGEAFVFPRAMVHFLYNMDTAAPAVVLSGLNSQSPGAQLVPFSAFRTEPRLPDEVLKKAFKITGQDVQRIQ 219          
BLAST of DN618156 vs. ExPASy Swiss-Prot
Match: GL111_ORYSJ (Germin-like protein 11-1 OS=Oryza sativa subsp. japonica GN=Os11g0537300 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.988e-19
Identity = 51/112 (45.54%), Postives = 64/112 (57.14%), Query Frame = -2
Query:  258 QIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSI 593
            + PGLNTLGIS  R D A  G   PH HPRASE+  V  G++  GF  +      L  K L +GDVF+FP+GL+HF  N G   A  +S LNSQ PG V I   +F  +  +
Sbjct:   86 EFPGLNTLGISMARTDIAVSGAVLPHSHPRASEMMFVHSGSVVAGFFDT---KGKLFQKTLAEGDVFIFPRGLVHFIMNYGFGLATTFSVLNSQNPGVVGITHAMFAPDSEV 194          
BLAST of DN618156 vs. ExPASy Swiss-Prot
Match: GL33_ARATH (Germin-like protein subfamily 3 member 3 OS=Arabidopsis thaliana GN=GER3 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.223e-18
Identity = 48/103 (46.60%), Postives = 62/103 (60.19%), Query Frame = -2
Query:  303 TDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPG 611
            T A      G+N LG+S  R+D A  G  P H HP ASE+ +V++GT+  GF++S    N +  K LN+GD  VFPQGL+HFQ N GK  A A+ A  S  PG
Sbjct:   72 TPAFAPAYAGINGLGVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISSA---NKVYLKTLNRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPG 171          
BLAST of DN618156 vs. ExPASy Swiss-Prot
Match: GL91_ORYSJ (Germin-like protein 9-1 OS=Oryza sativa subsp. japonica GN=Os09g0568500 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.407e-18
Identity = 52/139 (37.41%), Postives = 77/139 (55.40%), Query Frame = -2
Query:  198 TDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIG-KTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQ 611
            T A   + P L    +S   + +      PPHIHPRASE+ +V++G L VG V + + N T+  + L  GD+FVFP+G++HFQFN G    A A+SA  S  PG +++   +FG+   I+   L K+   D   V  L+
Sbjct:   69 TKATHAEFPALLGQSVSYAALVFGAGTVNPPHIHPRASELLVVVQGPLLVGLVDAAR-NGTVYTQTLQTGDMFVFPKGMVHFQFNNGTDVVARAFSAFGSATPGTISLPAALFGS--GIDDTILDKSMHTDQATVDQLK 204          
BLAST of DN618156 vs. ExPASy Swiss-Prot
Match: GLP1_SINAL (Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.669e-17
Identity = 47/103 (45.63%), Postives = 61/103 (59.22%), Query Frame = -2
Query:  303 TDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPG 611
            T A      GLN L +S  R+D A  G  P H HP ASE+ +V++GT+  GF++S    N +  K L++GD  VFPQGL+HFQ N GK  A A+ A  S  PG
Sbjct:   72 TPAFAPAFAGLNGLDVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISSA---NKVYLKTLSRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPG 171          
BLAST of DN618156 vs. ExPASy Swiss-Prot
Match: GLP1_IPONI (Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.831e-14
Identity = 47/103 (45.63%), Postives = 58/103 (56.31%), Query Frame = -2
Query:  303 TDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPG 611
            T A V Q PG+  LG++  R+D AP G  P H HP ASEI  V+EGT+   F++S    N +  K L  GDV VFPQGL+ FQ   GK  A     L  + PG
Sbjct:   75 TPAFVGQFPGVIGLGVTLARLDLAPGGVIPMHTHPGASEILNVVEGTILAAFISS---GNKVYEKALYPGDVMVFPQGLLDFQEITGKI-APGLCELRQRNPG 173          
The following BLAST results are available for this feature:
BLAST of DN618156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GL11_ARATH5.892e-2038.93Germin-like protein subfamily 1 member 1 OS=Arabid... [more]
GL31_ORYSJ1.005e-1939.39Germin-like protein 3-1 OS=Oryza sativa subsp. jap... [more]
GL111_ORYSJ4.988e-1945.54Germin-like protein 11-1 OS=Oryza sativa subsp. ja... [more]
GL33_ARATH4.223e-1846.60Germin-like protein subfamily 3 member 3 OS=Arabid... [more]
GL91_ORYSJ9.407e-1837.41Germin-like protein 9-1 OS=Oryza sativa subsp. jap... [more]
GLP1_SINAL4.669e-1745.63Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2... [more]
GLP1_IPONI4.831e-1445.63Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02C24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618156 ID=DN618156; Name=DN618156; organism=Citrus sinensis; type=EST; length=612bp
CTGCTAAATAAAAACAATAACAATTATGTTTATTACATGGCCACAGTCAG
CCTGGAGAGAGGTTCATGAGAGACCTCTTTTATTACATTAATTAAGATAT
GATAATCTGGAGATAAAGTAATACAGCCACTAGTGAAGAGGCCATTTATA
TTAAAGCTCATTAATTCCTTCTCCTAATTGCCATTAATGAACTTATTTTG
AAGATCTTTCACTATCTTTGGGTCCAACTGGAATGCCTTGCCAAGAAAAT
CGGGATTGATTGAAGGATTGGCTCCAAAGACTGTGTCGGCTATGGTAACT
TCACCCGGGAATTGGCTGTTTAGAGCAGAATAGGCAGCTGCATTTGTTTT
TCCAATGTTGAATTGGAAGTGAATCAAACCTTGTGGAAACACAAAAACAT
CTCCCTTATTTAGAACTTTTGCGATGAGTGTGTTATTCAGTTGGTCTGAT
GTCACAAAACCGACATAAAGAGTTCCTTCCAGGACTAAGAAGATTTCGCT
GGCACGGGGGTGAATGTGAGGTGGCCTTTGGCCATATGGTGCATAGTCAA
TACGGAATGCTGATATGCCAAGGGTGTTGAGTCCTGGAATTTGCTCAACA
TTTGCATCTGTT
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