DN618151

Overview
NameDN618151
Unique NameDN618151
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length436
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618151 vs. ExPASy Swiss-Prot
Match: RL21_MOUSE (60S ribosomal protein L21 OS=Mus musculus GN=Rpl21 PE=2 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 5.292e-34
Identity = 65/118 (55.08%), Postives = 89/118 (75.42%), Query Frame = 1
Query:   70 GLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARG 423
            G R  TR +F+RPFRK G +PL+TY+R YK GD VD+K  G V KGMPHK YHG+TGRV+NVT+ A+G+ +NKQV  +I+ KRI+VR+EH++ S+  + F  R K+ND+ K +AK +G
Sbjct:    6 GKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKG 123          
BLAST of DN618151 vs. ExPASy Swiss-Prot
Match: RL21_CHILA (60S ribosomal protein L21 OS=Chinchilla lanigera GN=RPL21 PE=2 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 9.026e-34
Identity = 64/118 (54.24%), Postives = 89/118 (75.42%), Query Frame = 1
Query:   70 GLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARG 423
            G R  TR +F+RP+RK G +PL+TY+R YK GD VD+K  G V KGMPHK YHG+TGRV+NVT+ A+G+ +NKQV  +I+ KRI+VR+EH++ S+  + F  R K+ND+ K +AK +G
Sbjct:    6 GKRRGTRYMFSRPYRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKG 123          
BLAST of DN618151 vs. ExPASy Swiss-Prot
Match: RL21_CAPHI (60S ribosomal protein L21 OS=Capra hircus GN=RPL21 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.179e-33
Identity = 64/118 (54.24%), Postives = 89/118 (75.42%), Query Frame = 1
Query:   70 GLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARG 423
            G R  TR +F+RPFRK G +PL+TY+R Y+ GD VD+K  G V KGMPHK YHG+TGRV+NVT+ A+G+ +NKQV  +I+ KRI+VR+EH++ S+  + F  R K+ND+ K +AK +G
Sbjct:    6 GKRRGTRYMFSRPFRKHGVVPLATYMRIYRKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKG 123          
BLAST of DN618151 vs. ExPASy Swiss-Prot
Match: RL21_CAEEL (60S ribosomal protein L21 OS=Caenorhabditis elegans GN=rpl-21 PE=1 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 9.980e-33
Identity = 66/126 (52.38%), Postives = 87/126 (69.05%), Query Frame = 1
Query:   55 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVI 432
            M    GLR  TR +FAR FRK G   LSTY   YK GD VD+K NGA  KGMP K YHGRTGR++NVT+ A+G+ +NK+V   I+ KRI++R+EH++PS+C  +F  R K NDE +  AK+ G+ +
Sbjct:    1 MTNSKGLRRGTRYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGRTGRIFNVTRGAVGIIVNKRVRGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAKSAGQPV 126          
BLAST of DN618151 vs. ExPASy Swiss-Prot
Match: RL21_ENTHI (60S ribosomal protein L21 OS=Entamoeba histolytica GN=RPL21 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 2.718e-30
Identity = 62/127 (48.82%), Postives = 83/127 (65.35%), Query Frame = 1
Query:   55 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRK-------KKNDELKADAK 414
            MP  +G   RTR LF RPFR  G    ST L TYK+GDYV +  N ++  G+P+K +HG+TGRVWNV   AIGV +NK+V NRI+ KR+H+  EH++PS C ++F  RK       K+N +LK + K
Sbjct:    1 MPLSNGRNRRTRKLFKRPFRGHGLSNTSTILHTYKVGDYVTILCNSSIQHGLPYKAFHGKTGRVWNVNPHAIGVMVNKKVNNRIVVKRLHISPEHIRPSGCQKDFLERKAAVAAIRKQNIQLKKEGK 127          
BLAST of DN618151 vs. ExPASy Swiss-Prot
Match: RL21_PYUST (60S ribosomal protein L21 (Fragment) OS=Pyura stolonifera GN=RPL21 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 1.069e-26
Identity = 54/113 (47.79%), Postives = 81/113 (71.68%), Query Frame = 1
Query:   82 RTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKAR 420
            R  D+F++ FR++G IPL+ YL  YK GD VD+K +G+V K  PHK YHG+TGR++NVT+ A+G+ +NKQV  RII KRI+VR+EH++ S+    F  R  +N+  + +A+ +
Sbjct:    9 RGSDMFSKKFRERGAIPLNKYLTVYKKGDIVDIKGDGSVQKVCPHKVYHGKTGRIFNVTQHAVGIIVNKQVRGRIIAKRINVRIEHIKHSKSRISFIQRVHENERKRKEAREK 121          
BLAST of DN618151 vs. ExPASy Swiss-Prot
Match: RL21_ENCCU (60S ribosomal protein L21 OS=Encephalitozoon cuniculi GN=RPL21 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.396e-26
Identity = 59/122 (48.36%), Postives = 84/122 (68.85%), Query Frame = 1
Query:   70 GLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVIS 435
            G R  TR LF++  RK G   +S YL  Y+IGD VD+ VN A+ KGMPHK+YHGRTGRV++V  R++ V + K+V  + + K+I VR+EHV+ SRC+EE + R     E+  DA++RG V++
Sbjct:    5 GYRRGTRYLFSQDHRKHGVAHVSKYLEKYEIGDMVDILVNPAMMKGMPHKYYHGRTGRVYDVKPRSLNVALYKRVRGKYVIKKIIVRIEHVRKSRCSEESQKRILMAAEMARDAESRGVVLA 126          
BLAST of DN618151 vs. ExPASy Swiss-Prot
Match: RL21_PIG (60S ribosomal protein L21 (Fragment) OS=Sus scrofa GN=RPL21 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.502e-15
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 1
Query:   70 GLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTG 240
            G R  TR +F+RPFRK G +PL+TY+R YK GD VD+K  G V KG+PHK YHG+TG
Sbjct:    6 GKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGLPHKCYHGKTG 62          
BLAST of DN618151 vs. ExPASy Swiss-Prot
Match: RL21_STAMF (50S ribosomal protein L21e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl21e PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.083e-14
Identity = 40/99 (40.40%), Postives = 63/99 (63.64%), Query Frame = 1
Query:   61 AGHGLRSRTRDLFARPFRKKGYIP-LSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSR 354
            A  G R RTR +F++  R+KG +P LS  +  YK GD V + VN A+HKGMPH+ YHG+TG +  + KR     +   +G++  +K + +R EH++P++
Sbjct:    4 APRGYRHRTRKVFSKHIREKGAVPPLSLLMIDYKPGDKVHIVVNPAIHKGMPHRRYHGKTGTI--IGKRGKAYIVKITLGDK--EKTLFIRPEHLRPAK 98          
BLAST of DN618151 vs. ExPASy Swiss-Prot
Match: RL21_SULAC (50S ribosomal protein L21e OS=Sulfolobus acidocaldarius GN=rpl21e PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.770e-13
Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = 1
Query:   70 GLRSRTRDLFARPFRKKGYIP-LSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQP 348
            G RS+TR L  +  R+KG IP LS  +  Y  G+YV VK+N ++HKGMPH+ YHG+ G V  V KR    E+   +G++  ++ + VR EH+ P
Sbjct:    7 GYRSKTRKLLEKKVREKGAIPKLSLLMHDYSQGEYVVVKINPSIHKGMPHRRYHGKVGLV--VGKRGKAYEVKVNIGDK--ERVLIVRPEHLIP 96          
The following BLAST results are available for this feature:
BLAST of DN618151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RL21_MOUSE5.292e-3455.0860S ribosomal protein L21 OS=Mus musculus GN=Rpl21... [more]
RL21_CHILA9.026e-3454.2460S ribosomal protein L21 OS=Chinchilla lanigera G... [more]
RL21_CAPHI1.179e-3354.2460S ribosomal protein L21 OS=Capra hircus GN=RPL21... [more]
RL21_CAEEL9.980e-3352.3860S ribosomal protein L21 OS=Caenorhabditis elegan... [more]
RL21_ENTHI2.718e-3048.8260S ribosomal protein L21 OS=Entamoeba histolytica... [more]
RL21_PYUST1.069e-2647.7960S ribosomal protein L21 (Fragment) OS=Pyura stol... [more]
RL21_ENCCU1.396e-2648.3660S ribosomal protein L21 OS=Encephalitozoon cunic... [more]
RL21_PIG5.502e-1561.4060S ribosomal protein L21 (Fragment) OS=Sus scrofa... [more]
RL21_STAMF6.083e-1440.4050S ribosomal protein L21e OS=Staphylothermus mari... [more]
RL21_SULAC1.770e-1343.6250S ribosomal protein L21e OS=Sulfolobus acidocald... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02C21_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618151 ID=DN618151; Name=DN618151; organism=Citrus sinensis; type=EST; length=436bp
CACTCACATCTCCTTCCTCTTCTCCAGAGAGAAAAAAGGACCAGTGACTC
AAACATGCCGGCCGGTCACGGTTTGAGGTCCCGAACAAGGGATTTGTTCG
CACGCCCCTTCAGAAAGAAGGGTTACATCCCCTTGTCCACTTACCTTAGG
ACTTACAAAATCGGCGACTACGTTGACGTCAAAGTGAACGGCGCCGTTCA
CAAAGGTATGCCCCACAAGTTCTACCATGGACGTACCGGCCGTGTCTGGA
ATGTCACCAAGCGCGCTATCGGCGTCGAGATTAACAAGCAGGTTGGTAAC
AGGATCATCAAGAAGAGGATTCATGTTCGCGTGGAGCATGTTCAACCTTC
AAGGTGTACCGAGGAGTTCAAGCTGAGGAAGAAGAAGAATGATGAACTCA
AGGCAGATGCTAAGGCAAGAGGTGAGGTCATCAGTA
back to top