DN618150

Overview
NameDN618150
Unique NameDN618150
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618150 vs. ExPASy Swiss-Prot
Match: RL21_CAPHI (60S ribosomal protein L21 OS=Capra hircus GN=RPL21 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.322e-34
Identity = 68/138 (49.28%), Postives = 95/138 (68.84%), Query Frame = -1
Query:  215 RKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 622
            RK G +PL+TY+R Y+ GD VD+K  G V KGMPHK YHG+TGRV+NVT+ A+G+ +NKQV  +I+ KRI+VR+EH++ S+  + F  R K+ND+ K +AK +G  +  KRQP  P+    V   G   E + PIPY+
Sbjct:   20 RKHGVVPLATYMRIYRKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYE 157          
BLAST of DN618150 vs. ExPASy Swiss-Prot
Match: RL21_RAT (60S ribosomal protein L21 OS=Rattus norvegicus GN=Rpl21 PE=1 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 4.779e-33
Identity = 67/138 (48.55%), Postives = 93/138 (67.39%), Query Frame = -1
Query:  215 RKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 622
            RK G +PL+TY+R YK GD VD+K  G V KGMPHK YHG+TGRV+NVT+ A+G+ +NKQV  +I+ KRI+VR+EH++ S+  + F  R K+ND+ K +AK +G  +    QP  P+    V   G   E + PIPY+
Sbjct:   20 RKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLNGQPAPPREAHFVRTNGKEPELLEPIPYE 157          
BLAST of DN618150 vs. ExPASy Swiss-Prot
Match: RL21_MOUSE (60S ribosomal protein L21 OS=Mus musculus GN=Rpl21 PE=2 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 6.241e-33
Identity = 67/138 (48.55%), Postives = 93/138 (67.39%), Query Frame = -1
Query:  215 RKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 622
            RK G +PL+TY+R YK GD VD+K  G V KGMPHK YHG+TGRV+NVT+ A+G+ +NKQV  +I+ KRI+VR+EH++ S+  + F  R K+ND+ K +AK +G  +  KR    P+    V   G   E + PIPY+
Sbjct:   20 RKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRHAAPPREAHFVRTNGKEPELLEPIPYE 157          
BLAST of DN618150 vs. ExPASy Swiss-Prot
Match: RL21_PYUST (60S ribosomal protein L21 (Fragment) OS=Pyura stolonifera GN=RPL21 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 4.945e-30
Identity = 64/137 (46.72%), Postives = 94/137 (68.61%), Query Frame = -1
Query:  215 RKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPG-FMVEGATLETVTPIPYD 622
            R++G IPL+ YL  YK GD VD+K +G+V K  PHK YHG+TGR++NVT+ A+G+ +NKQV  RII KRI+VR+EH++ S+    F  R  +N+  + +A+ +   ++ KRQP+ P+ G F+   A  E V PIPY+
Sbjct:   19 RERGAIPLNKYLTVYKKGDIVDIKGDGSVQKVCPHKVYHGKTGRIFNVTQHAVGIIVNKQVRGRIIAKRINVRIEHIKHSKSRISFIQRVHENERKRKEAREKKIRVNLKRQPQQPRTGHFVRSSAEPELVEPIPYE 155          
BLAST of DN618150 vs. ExPASy Swiss-Prot
Match: RL21_CAEEL (60S ribosomal protein L21 OS=Caenorhabditis elegans GN=rpl-21 PE=1 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 1.879e-29
Identity = 65/141 (46.10%), Postives = 92/141 (65.25%), Query Frame = -1
Query:  209 RKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGE-VISTKRQPKGPKPGFMV--EGATLETVTPIPYDVV 622
            RK G   LSTY   YK GD VD+K NGA  KGMP K YHGRTGR++NVT+ A+G+ +NK+V   I+ KRI++R+EH++PS+C  +F  R K NDE +  AK+ G+ V + KR P  P+    V  +    E + P+ +++V
Sbjct:   20 RKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGRTGRIFNVTRGAVGIIVNKRVRGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAKSAGQPVPALKRLPVAPRGAHTVTTQNNEPELLAPLRFEIV 160          
BLAST of DN618150 vs. ExPASy Swiss-Prot
Match: RL21_ENTHI (60S ribosomal protein L21 OS=Entamoeba histolytica GN=RPL21 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 6.045e-28
Identity = 62/145 (42.76%), Postives = 92/145 (63.45%), Query Frame = -1
Query:  215 RKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRK-------KKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLE--TVTPIPYD 622
            R  G    ST L TYK+GDYV +  N ++  G+P+K +HG+TGRVWNV   AIGV +NK+V NRI+ KR+H+  EH++PS C ++F  RK       K+N +LK + K     +  KR PK P+P  +++GA ++  TV P+ ++
Sbjct:   20 RGHGLSNTSTILHTYKVGDYVTILCNSSIQHGLPYKAFHGKTGRVWNVNPHAIGVMVNKKVNNRIVVKRLHISPEHIRPSGCQKDFLERKAAVAAIRKQNIQLKKEGKPL-LPLPAKRLPKQPRPAELIKGADIKFTTVAPLKFE 163          
BLAST of DN618150 vs. ExPASy Swiss-Prot
Match: RL21_ENCCU (60S ribosomal protein L21 OS=Encephalitozoon cuniculi GN=RPL21 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.256e-25
Identity = 57/118 (48.31%), Postives = 84/118 (71.19%), Query Frame = -1
Query:  272 RKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVIS-TKRQPKGPK 622
            RK G   +S YL  Y+IGD VD+ VN A+ KGMPHK+YHGRTGRV++V  R++ V + K+V  + + K+I VR+EHV+ SRC+EE + R     E+  DA++RG V++ +KR+ +GP+
Sbjct:   19 RKHGVAHVSKYLEKYEIGDMVDILVNPAMMKGMPHKYYHGRTGRVYDVKPRSLNVALYKRVRGKYVIKKIIVRIEHVRKSRCSEESQKRILMAAEMARDAESRGVVLAPSKRKIEGPR 136          
The following BLAST results are available for this feature:
BLAST of DN618150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RL21_CAPHI4.322e-3449.2860S ribosomal protein L21 OS=Capra hircus GN=RPL21... [more]
RL21_RAT4.779e-3348.5560S ribosomal protein L21 OS=Rattus norvegicus GN=... [more]
RL21_MOUSE6.241e-3348.5560S ribosomal protein L21 OS=Mus musculus GN=Rpl21... [more]
RL21_PYUST4.945e-3046.7260S ribosomal protein L21 (Fragment) OS=Pyura stol... [more]
RL21_CAEEL1.879e-2946.1060S ribosomal protein L21 OS=Caenorhabditis elegan... [more]
RL21_ENTHI6.045e-2842.7660S ribosomal protein L21 OS=Entamoeba histolytica... [more]
RL21_ENCCU6.256e-2548.3160S ribosomal protein L21 OS=Encephalitozoon cunic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02C21_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618150 ID=DN618150; Name=DN618150; organism=Citrus sinensis; type=EST; length=622bp
CCCCTTTTTTTTCGGAAAACATCTCTTGTTTCTAATATAAAATGAAGATT
AAAAATAAACATCTCTGCAATTGCAGTTCCTCTCCAAAAACAAAACTAAT
AAGGATGAAAATACATCCAAATAAGACCATGTCCAGAAAAGTCTGCAACA
AGTAACAAAACAGCAACAATACCAAAAAGATAACCTAGTAACCACCCTTA
AGATCATTGACGACATCATAAGGAATGGGAGTGACAGTTTCCAATGTTGC
ACCTTCCACCATGAAACCTGGTTTAGGGCCCTTTGGCTGCCTCTTTGTAC
TGATGACCTCACCTCTTGCCTTAGCATCTGCCTTGAGTTCATCATTCTTC
TTCTTCCTCAGCTTGAACTCCTCGGTACACCTTGAAGGTTGAACATGCTC
CACGCGAACATGAATCCTCTTCTTGATGATCCTGTTACCAACCTGCTTGT
TAATCTCGACGCCGATAGCGCGCTTGGTGACATTCCAGACACGGCCGGTA
CGTCCATGGTAGAACTTGTGGGGCATACCTTTGTGAACGGCGCCGTTCAC
TTTGACGTCAACGTAGTCGCCGATTTTGTAAGTCCTAAGGTAAGTGGACA
AGGGGATGTAACCCTTCTTTCT
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