DN618149

Overview
NameDN618149
Unique NameDN618149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_STRS2 (Ribose-5-phosphate isomerase A OS=Streptococcus suis (strain 98HAH33) GN=rpiA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.240e-11
Identity = 37/83 (44.58%), Postives = 52/83 (62.65%), Query Frame = 2
Query:  254 DLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            +LK+    KA ++V  GM +GLGTGSTA + V +IG+ +    L+ I G+ TS  T E A SL IPL  +D+   +DL +DGA
Sbjct:    3 NLKEQVGIKAAEFVTDGMIVGLGTGSTAYYFVQEIGRRVAEEGLQ-ITGVTTSHATAEHAASLGIPLKNIDEVEYVDLTVDGA 84          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_RHIL3 (Ribose-5-phosphate isomerase A OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rpiA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.240e-11
Identity = 37/83 (44.58%), Postives = 54/83 (65.06%), Query Frame = 2
Query:  254 DLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            ++K  AA+ A+ +V+SGM LG+GTGSTA   V  + + +  G    + G+PTS+RT      L +PL +LD+ P+LDL IDGA
Sbjct:    5 EMKIKAAEAALAHVESGMRLGIGTGSTAEEFVRLLAEKVAGGFR--VEGVPTSERTARLCVELGVPLKSLDELPALDLTIDGA 85          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_PYRFU (Ribose-5-phosphate isomerase A OS=Pyrococcus furiosus GN=rpiA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.537e-11
Identity = 27/84 (32.14%), Postives = 55/84 (65.48%), Query Frame = 2
Query:  251 DDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            +++KK  A  A+++++  M +GLGTGST A+ +  +G++++ G++ DI G+P   + +       +P+ +LD   ++D+A+DGA
Sbjct:    4 EEMKKAVARAALEFIEDDMVVGLGTGSTTAYFIRYLGEMIEKGKVEDIYGVPPPIKQKFLRMESGVPVLSLDQVDAIDIAVDGA 87          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_AGRT5 (Ribose-5-phosphate isomerase A OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rpiA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.537e-11
Identity = 36/82 (43.90%), Postives = 51/82 (62.20%), Query Frame = 2
Query:  257 LKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            +K  AA+ A+ +V+ GM LG+GTGSTA   V  + + +  G    + G+PTS+RT      L +PL +LD+ P LDL IDGA
Sbjct:    6 MKIKAAEAALSHVQDGMRLGIGTGSTAEEFVRLLAEKVAAG--LKVEGVPTSERTARLCVELGVPLKSLDELPELDLTIDGA 85          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA2_OCEIH (Ribose-5-phosphate isomerase A 2 OS=Oceanobacillus iheyensis GN=rpiA2 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.537e-11
Identity = 34/80 (42.50%), Postives = 53/80 (66.25%), Query Frame = 2
Query:  260 KKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDG 499
            K++AA +AV Y+K GM +G+G+GST    +  +   ++   L+ +VGIP SK++E  A  L IPLTT   + ++D+AIDG
Sbjct:    6 KQIAAQEAVRYIKDGMVIGIGSGSTVNEFLYCLAARMRKERLQ-VVGIPASKKSERLATELGIPLTTFATYQNVDIAIDG 84          
The following BLAST results are available for this feature:
BLAST of DN618149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
RPIA_STRS24.240e-1144.58Ribose-5-phosphate isomerase A OS=Streptococcus su... [more]
RPIA_RHIL34.240e-1144.58Ribose-5-phosphate isomerase A OS=Rhizobium legumi... [more]
RPIA_PYRFU5.537e-1132.14Ribose-5-phosphate isomerase A OS=Pyrococcus furio... [more]
RPIA_AGRT55.537e-1143.90Ribose-5-phosphate isomerase A OS=Agrobacterium tu... [more]
RPIA2_OCEIH5.537e-1142.50Ribose-5-phosphate isomerase A 2 OS=Oceanobacillus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02C20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618149 ID=DN618149; Name=DN618149; organism=Citrus sinensis; type=EST; length=503bp
AGCCAAAGCCATCCAAAACACACACAGATAGATTGATCAACAACAACTTC
TCACAACTCACCTCTCATTTATTTTCCTCTCAAACTCACCCCATCACCAC
CACAGCCTCCGCCCAAGAAAAATGACTTCTTTATCCTTCCTCCCCACTCT
CCATCTCTCCACCTCCGCTCACTTCCTCCCACGCGCCCCCAAATCCCTCA
GACCACGCGCCATTTCCATCAAAGCCCAGGCCGTCCCGGCCCTCACCCAA
GACGACTTGAAGAAGCTCGCCGCCGACAAGGCCGTTGACTACGTCAAATC
CGGCATGGCCCTCGGCCTCGGTACCGGCTCCACCGCCGCCTTCGTCGTCG
ACAAGATCGGCCAACTCTTGAAAACCGGCGAGTTAAGGGACATCGTCGGA
ATCCCAACTTCAAAACGCACGGAAGAGCAAGCCAAGTCGCTTAACATTCC
CTTAACCACACTTGACGATCACCCATCACTGGATTTGGCCATTGACGGCG
CCG
back to top