DN618149

Overview
NameDN618149
Unique NameDN618149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_NITWN (Ribose-5-phosphate isomerase A OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rpiA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.965e-16
Identity = 43/87 (49.43%), Postives = 60/87 (68.97%), Query Frame = 2
Query:  242 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            +T D LK+ AA +A++YV+ GM LGLGTGSTA   V+ +G+ ++ G    +VG+PTS+ T   A+   +PLTTLDD   LDL +DGA
Sbjct:    1 MTMDALKRQAAARALEYVEDGMRLGLGTGSTAKHFVELLGERVRDG--LKVVGVPTSEATRADAERCGVPLTTLDDLDRLDLTVDGA 85          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_NITHX (Ribose-5-phosphate isomerase A OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rpiA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.566e-16
Identity = 44/87 (50.57%), Postives = 60/87 (68.97%), Query Frame = 2
Query:  242 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            +T D LK+ AA +A++YV+ GM LGLGTGSTA   V+ +G+ ++ G    +VG+PTS+ T   A+   IPLTTLDD   LDL +DGA
Sbjct:    1 MTLDALKRQAAARALEYVEDGMRLGLGTGSTAKHFVELLGERVRDG--LKVVGVPTSEATRADAERCGIPLTTLDDLDRLDLTVDGA 85          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_CHLAD (Ribose-5-phosphate isomerase A OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rpiA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.566e-16
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  251 DDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            + LK +AA  AV  ++ GM +GLG GSTAA+    IG+ L  GELR+IVG+P ++ T   A+ L IPLTTLDD   +D+ IDGA
Sbjct:    5 ETLKAMAAAAAVALIQPGMVIGLGFGSTAAYATRMIGERLANGELREIVGVPCAEGTAALARELGIPLTTLDDVERVDITIDGA 88          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_OLICO (Ribose-5-phosphate isomerase A OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rpiA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.352e-16
Identity = 43/87 (49.43%), Postives = 63/87 (72.41%), Query Frame = 2
Query:  242 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            +++++LK+ AA +A++YV  GM LGLGTGSTA   V+ +G+ ++ G LR +VG+PTS+ T   A+   +PLTTLDD   LDL +DGA
Sbjct:    1 MSKEELKRAAAARALEYVSDGMQLGLGTGSTAKHFVELLGERVRAG-LR-VVGVPTSEGTRADAERCGVPLTTLDDVDHLDLTVDGA 85          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_ENTFA (Ribose-5-phosphate isomerase A OS=Enterococcus faecalis GN=rpiA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.352e-16
Identity = 44/83 (53.01%), Postives = 61/83 (73.49%), Query Frame = 2
Query:  254 DLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            +LK++   +A  YV+ GM +GLGTGSTA F+VD+IG+ +K   L  IVG+ TSK TE+QA +L IPL ++D+ P +DL IDGA
Sbjct:    2 NLKQMVGIEAAKYVEDGMIVGLGTGSTAKFMVDEIGRRVKEEGL-SIVGVTTSKETEKQALALGIPLKSIDEVPYVDLTIDGA 83          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_PROMT (Ribose-5-phosphate isomerase A OS=Prochlorococcus marinus (strain NATL2A) GN=rpiA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.752e-16
Identity = 40/85 (47.06%), Postives = 59/85 (69.41%), Query Frame = 2
Query:  248 QDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            Q+ +KK  A  AVD +++GM LGLG+GSTAA +++ +   +K+GE++D+VG+ TS + E  A  L IPL +L     +DLAIDGA
Sbjct:    4 QNQMKKAVAQAAVDQIQNGMILGLGSGSTAALMIEALAIKIKSGEIKDVVGVTTSFQGEVLASELGIPLKSLSSVSEIDLAIDGA 88          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_PROM1 (Ribose-5-phosphate isomerase A OS=Prochlorococcus marinus (strain NATL1A) GN=rpiA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.752e-16
Identity = 40/85 (47.06%), Postives = 59/85 (69.41%), Query Frame = 2
Query:  248 QDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            Q+ +KK  A  AVD +++GM LGLG+GSTAA +++ +   +K+GE++D+VG+ TS + E  A  L IPL +L     +DLAIDGA
Sbjct:    4 QNQMKKAVAQAAVDQIQNGMILGLGSGSTAALMIEALAIKIKSGEIKDVVGVTTSFQGEVLASELGIPLKSLSSVSEIDLAIDGA 88          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_SYNS9 (Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain CC9902) GN=rpiA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.274e-15
Identity = 43/85 (50.59%), Postives = 58/85 (68.24%), Query Frame = 2
Query:  248 QDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            Q  +K   AD AV+ +K GM LGLG+GSTAA ++  +G  L +GEL++IVG+ TS + E  A  LNIPL +L+    +DLAIDGA
Sbjct:    5 QTQMKHAVADAAVEQIKDGMVLGLGSGSTAALMIRALGAKLASGELKNIVGVTTSFQGEVLAAELNIPLLSLNAVDRIDLAIDGA 89          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_ROSS1 (Ribose-5-phosphate isomerase A OS=Roseiflexus sp. (strain RS-1) GN=rpiA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.274e-15
Identity = 41/81 (50.62%), Postives = 57/81 (70.37%), Query Frame = 2
Query:  260 KKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            ++ AA+ A+ +V+SGM +GLGTGSTA F++  +   L  G L+ + G+PTS+ T   A+ L IPLTTLD  P LDLA+DGA
Sbjct:    7 RQRAAEHALRHVESGMTIGLGTGSTATFMLYGLAARLADGRLQRVTGVPTSEVTAALARELGIPLTTLDRQPHLDLALDGA 87          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_PROMP (Ribose-5-phosphate isomerase A OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rpiA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.274e-15
Identity = 39/82 (47.56%), Postives = 60/82 (73.17%), Query Frame = 2
Query:  257 LKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            +K++ AD A++ V+ GM LGLG+GSTAA ++  + + +++G+L++I G+PTS ++E  A  LNIPL  L   P +DLAIDGA
Sbjct:    1 MKQIVADSAIEEVEDGMILGLGSGSTAALMIKSLAEKIRSGKLKNIKGVPTSFQSEVLALELNIPLIDLASVPYIDLAIDGA 82          
The following BLAST results are available for this feature:
BLAST of DN618149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
RPIA_NITWN1.965e-1649.43Ribose-5-phosphate isomerase A OS=Nitrobacter wino... [more]
RPIA_NITHX2.566e-1650.57Ribose-5-phosphate isomerase A OS=Nitrobacter hamb... [more]
RPIA_CHLAD2.566e-1651.19Ribose-5-phosphate isomerase A OS=Chloroflexus agg... [more]
RPIA_OLICO3.352e-1649.43Ribose-5-phosphate isomerase A OS=Oligotropha carb... [more]
RPIA_ENTFA3.352e-1653.01Ribose-5-phosphate isomerase A OS=Enterococcus fae... [more]
RPIA_PROMT9.752e-1647.06Ribose-5-phosphate isomerase A OS=Prochlorococcus ... [more]
RPIA_PROM19.752e-1647.06Ribose-5-phosphate isomerase A OS=Prochlorococcus ... [more]
RPIA_SYNS91.274e-1550.59Ribose-5-phosphate isomerase A OS=Synechococcus sp... [more]
RPIA_ROSS11.274e-1550.62Ribose-5-phosphate isomerase A OS=Roseiflexus sp. ... [more]
RPIA_PROMP1.274e-1547.56Ribose-5-phosphate isomerase A OS=Prochlorococcus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02C20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618149 ID=DN618149; Name=DN618149; organism=Citrus sinensis; type=EST; length=503bp
AGCCAAAGCCATCCAAAACACACACAGATAGATTGATCAACAACAACTTC
TCACAACTCACCTCTCATTTATTTTCCTCTCAAACTCACCCCATCACCAC
CACAGCCTCCGCCCAAGAAAAATGACTTCTTTATCCTTCCTCCCCACTCT
CCATCTCTCCACCTCCGCTCACTTCCTCCCACGCGCCCCCAAATCCCTCA
GACCACGCGCCATTTCCATCAAAGCCCAGGCCGTCCCGGCCCTCACCCAA
GACGACTTGAAGAAGCTCGCCGCCGACAAGGCCGTTGACTACGTCAAATC
CGGCATGGCCCTCGGCCTCGGTACCGGCTCCACCGCCGCCTTCGTCGTCG
ACAAGATCGGCCAACTCTTGAAAACCGGCGAGTTAAGGGACATCGTCGGA
ATCCCAACTTCAAAACGCACGGAAGAGCAAGCCAAGTCGCTTAACATTCC
CTTAACCACACTTGACGATCACCCATCACTGGATTTGGCCATTGACGGCG
CCG
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