DN618149

Overview
NameDN618149
Unique NameDN618149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_ANAVT (Ribose-5-phosphate isomerase A OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpiA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.274e-15
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 2
Query:  257 LKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            +K+     A   VKSG  +GLGTGST A+ +  +G  LK+GEL DIVGIPTS ++E  +K   +PLTTLD    +D+AIDGA
Sbjct:   11 MKQEVGKAAAALVKSGSIVGLGTGSTTAYTIQYLGDRLKSGELTDIVGIPTSFQSEVLSKQYGVPLTTLDAVDHIDIAIDGA 92          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_ANASP (Ribose-5-phosphate isomerase A OS=Anabaena sp. (strain PCC 7120) GN=rpiA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.274e-15
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 2
Query:  257 LKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            +K+     A   VKSG  +GLGTGST A+ +  +G  LK+GEL DIVGIPTS ++E  +K   +PLTTLD    +D+AIDGA
Sbjct:   11 MKQEVGKAAAALVKSGSIVGLGTGSTTAYTIQYLGDRLKSGELTDIVGIPTSFQSEVLSKQYGVPLTTLDAVDHIDIAIDGA 92          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_STRT1 (Ribose-5-phosphate isomerase A OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rpiA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.663e-15
Identity = 42/84 (50.00%), Postives = 60/84 (71.43%), Query Frame = 2
Query:  251 DDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            D+LKKLA   A  +V+ GM +GLGTGSTA F V++IG+ +K   L  +VG+ TS +T +QA+ L IPL ++DD  S+D+ +DGA
Sbjct:    2 DELKKLAGVYAAGFVEDGMVVGLGTGSTAYFFVEEIGRRIKEEGL-SVVGVTTSSQTTKQAEGLGIPLKSVDDIDSIDVTVDGA 84          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_LACLS (Ribose-5-phosphate isomerase A OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rpiA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.663e-15
Identity = 41/84 (48.81%), Postives = 61/84 (72.62%), Query Frame = 2
Query:  251 DDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            ++LKK    KA ++VKSGM +GLGTGSTAA+ V+++G+ +   +L +I G+ TS  T EQAK+L IPL ++D+   +DL +DGA
Sbjct:    2 ENLKKQVGIKAAEFVKSGMVVGLGTGSTAAYFVEELGRRVAEEQL-EITGVTTSSVTSEQAKALGIPLASIDEVDYVDLTVDGA 84          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_LACLM (Ribose-5-phosphate isomerase A OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=rpiA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.663e-15
Identity = 41/84 (48.81%), Postives = 61/84 (72.62%), Query Frame = 2
Query:  251 DDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            ++LKK    KA ++VKSGM +GLGTGSTAA+ V+++G+ +   +L +I G+ TS  T EQAK+L IPL ++D+   +DL +DGA
Sbjct:    2 ENLKKQVGIKAAEFVKSGMVVGLGTGSTAAYFVEELGRRVAEEQL-EITGVTTSSVTSEQAKALGIPLASIDEVDYVDLTVDGA 84          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_STRTD (Ribose-5-phosphate isomerase A OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rpiA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.172e-15
Identity = 42/84 (50.00%), Postives = 60/84 (71.43%), Query Frame = 2
Query:  251 DDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            D+LKKLA   A  +V+ GM +GLGTGSTA F V++IG+ +K   L  +VG+ TS +T +QA+ L IPL ++DD  S+D+ +DGA
Sbjct:    2 DELKKLAGVYAAGFVEDGMVVGLGTGSTAYFFVEEIGRRIKEEGL-SVVGVTTSTQTTKQAEGLGIPLKSVDDIDSIDVTVDGA 84          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_STRT2 (Ribose-5-phosphate isomerase A OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rpiA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.172e-15
Identity = 42/84 (50.00%), Postives = 60/84 (71.43%), Query Frame = 2
Query:  251 DDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            D+LKKLA   A  +V+ GM +GLGTGSTA F V++IG+ +K   L  +VG+ TS +T +QA+ L IPL ++DD  S+D+ +DGA
Sbjct:    2 DELKKLAGVYAAGFVEDGMVVGLGTGSTAYFFVEEIGRRIKEEGL-SVVGVTTSTQTTKQAEGLGIPLKSVDDIDSIDVTVDGA 84          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_PYRAB (Ribose-5-phosphate isomerase A OS=Pyrococcus abyssi GN=rpiA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.172e-15
Identity = 36/84 (42.86%), Postives = 60/84 (71.43%), Query Frame = 2
Query:  251 DDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            +++KK+AA +A+ +++  M +GLGTGST A+ +  +G ++K GE+ DIVG+PTS ++   A    IP+ TLD   ++D+A+DGA
Sbjct:    4 EEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIRLLGDMIKKGEVSDIVGVPTSYQSRLLAIESGIPVATLDQVDAIDVAVDGA 87          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_SYNY3 (Ribose-5-phosphate isomerase A OS=Synechocystis sp. (strain PCC 6803) GN=rpiA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.837e-15
Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = 2
Query:  257 LKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            +K+     A D VKS   +GLGTGST A+ ++ IG  LK GEL ++VGIPTS + E  A+   IPLTTLD    +D+AIDGA
Sbjct:   10 MKQAVGKAAADRVKSNTIVGLGTGSTTAYALEFIGDRLKKGELENVVGIPTSFQAEVLARKYGIPLTTLDVADRIDIAIDGA 91          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_PYRHO (Ribose-5-phosphate isomerase A OS=Pyrococcus horikoshii GN=rpiA PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.837e-15
Identity = 36/84 (42.86%), Postives = 61/84 (72.62%), Query Frame = 2
Query:  251 DDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            +++KK+AA +A+ +++  M +GLGTGST A+ +  +G+ LK GE+ DIVG+PTS + +  A   +IP+ +LD   ++D+A+DGA
Sbjct:    4 EEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQAKLLAIEHDIPIASLDQVDAIDVAVDGA 87          
The following BLAST results are available for this feature:
BLAST of DN618149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
RPIA_ANAVT1.274e-1551.22Ribose-5-phosphate isomerase A OS=Anabaena variabi... [more]
RPIA_ANASP1.274e-1551.22Ribose-5-phosphate isomerase A OS=Anabaena sp. (st... [more]
RPIA_STRT11.663e-1550.00Ribose-5-phosphate isomerase A OS=Streptococcus th... [more]
RPIA_LACLS1.663e-1548.81Ribose-5-phosphate isomerase A OS=Lactococcus lact... [more]
RPIA_LACLM1.663e-1548.81Ribose-5-phosphate isomerase A OS=Lactococcus lact... [more]
RPIA_STRTD2.172e-1550.00Ribose-5-phosphate isomerase A OS=Streptococcus th... [more]
RPIA_STRT22.172e-1550.00Ribose-5-phosphate isomerase A OS=Streptococcus th... [more]
RPIA_PYRAB2.172e-1542.86Ribose-5-phosphate isomerase A OS=Pyrococcus abyss... [more]
RPIA_SYNY32.837e-1551.22Ribose-5-phosphate isomerase A OS=Synechocystis sp... [more]
RPIA_PYRHO2.837e-1542.86Ribose-5-phosphate isomerase A OS=Pyrococcus horik... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02C20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618149 ID=DN618149; Name=DN618149; organism=Citrus sinensis; type=EST; length=503bp
AGCCAAAGCCATCCAAAACACACACAGATAGATTGATCAACAACAACTTC
TCACAACTCACCTCTCATTTATTTTCCTCTCAAACTCACCCCATCACCAC
CACAGCCTCCGCCCAAGAAAAATGACTTCTTTATCCTTCCTCCCCACTCT
CCATCTCTCCACCTCCGCTCACTTCCTCCCACGCGCCCCCAAATCCCTCA
GACCACGCGCCATTTCCATCAAAGCCCAGGCCGTCCCGGCCCTCACCCAA
GACGACTTGAAGAAGCTCGCCGCCGACAAGGCCGTTGACTACGTCAAATC
CGGCATGGCCCTCGGCCTCGGTACCGGCTCCACCGCCGCCTTCGTCGTCG
ACAAGATCGGCCAACTCTTGAAAACCGGCGAGTTAAGGGACATCGTCGGA
ATCCCAACTTCAAAACGCACGGAAGAGCAAGCCAAGTCGCTTAACATTCC
CTTAACCACACTTGACGATCACCCATCACTGGATTTGGCCATTGACGGCG
CCG
back to top