DN618149

Overview
NameDN618149
Unique NameDN618149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_PROMM (Ribose-5-phosphate isomerase A OS=Prochlorococcus marinus (strain MIT 9313) GN=rpiA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.837e-15
Identity = 43/85 (50.59%), Postives = 55/85 (64.71%), Query Frame = 2
Query:  248 QDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            Q  +K+  A  AV+ +K GM LGLG+GSTAA ++  +G  L +GELRDIVG+ TS + E  A  L IPL  L     +DLAIDGA
Sbjct:    5 QTQMKQAVAAAAVEQIKDGMVLGLGSGSTAALMIQALGAKLASGELRDIVGVTTSFQGEVMAAELGIPLRNLTAVDRIDLAIDGA 89          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_THET8 (Ribose-5-phosphate isomerase A OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rpiA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.706e-15
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  251 DDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            +  KK AA  A+ YV+ GM +GLGTGSTA + V ++ + L+ GEL+ +VG+PTS+ TEE AK   IPL  L     +DLAIDGA
Sbjct:    6 ESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELAKREGIPLVDLPPE-GVDLAIDGA 88          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_THET2 (Ribose-5-phosphate isomerase A OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rpiA PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.706e-15
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  251 DDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            +  KK AA  A+ YV+ GM +GLGTGSTA + V ++ + L+ GEL+ +VG+PTS+ TEE AK   IPL  L     +DLAIDGA
Sbjct:    6 ESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELAKREGIPLVDLPPE-GVDLAIDGA 88          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_LACLA (Ribose-5-phosphate isomerase A OS=Lactococcus lactis subsp. lactis GN=rpiA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.706e-15
Identity = 40/84 (47.62%), Postives = 60/84 (71.43%), Query Frame = 2
Query:  251 DDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            D+LKK    KA ++VKSGM +GLGTGSTAA+ V+++G+ +   +L +I G+ TS  T  QA++L IPL ++D+   +DL +DGA
Sbjct:    2 DNLKKQVGIKAAEFVKSGMVVGLGTGSTAAYFVEELGRRIAEEQL-EITGVTTSNVTSSQARALGIPLASIDEVDYVDLTVDGA 84          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_BACC1 (Ribose-5-phosphate isomerase A OS=Bacillus cereus (strain ATCC 10987) GN=rpiA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.706e-15
Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 2
Query:  254 DLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            +LK+LA + A  +VK GM +GLGTGST  + ++K+G+ +K G       +PTSK TE  A+ LNIPL +L+D  SLDL IDGA
Sbjct:    2 NLKQLAGEYAATFVKDGMKIGLGTGSTVYWTIEKLGERVKEG--LSFQAVPTSKETEVLAQQLNIPLISLNDIQSLDLTIDGA 82          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_STRS7 (Ribose-5-phosphate isomerase A OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=rpiA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.840e-15
Identity = 42/82 (51.22%), Postives = 57/82 (69.51%), Query Frame = 2
Query:  257 LKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            LKKLA   A  YV  GM +GLGTGSTA + V++IG+ +K   L+ +VG+ TS  T +QA+ L IPLT++DD   +DL +DGA
Sbjct:    4 LKKLAGVTAAQYVTDGMTIGLGTGSTAYYFVEEIGRRIKEEGLQ-VVGVTTSSVTTKQAEGLGIPLTSIDDIDCIDLTVDGA 84          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_STREM (Ribose-5-phosphate isomerase A OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=rpiA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.840e-15
Identity = 42/82 (51.22%), Postives = 57/82 (69.51%), Query Frame = 2
Query:  257 LKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            LKKLA   A  YV  GM +GLGTGSTA + V++IG+ +K   L+ +VG+ TS  T +QA+ L IPLT++DD   +DL +DGA
Sbjct:    4 LKKLAGVTAAQYVTDGMTIGLGTGSTAYYFVEEIGRRIKEEGLQ-VVGVTTSSVTTKQAEGLGIPLTSIDDIDCIDLTVDGA 84          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_CHLSY (Ribose-5-phosphate isomerase A OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rpiA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.840e-15
Identity = 41/81 (50.62%), Postives = 55/81 (67.90%), Query Frame = 2
Query:  260 KKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            K +AA  AV  V+ GM +GLG GSTAA+    I + L  G+L DIVG+P ++ T + A+ L IPLTTLD+  ++DL IDGA
Sbjct:   10 KAMAAAAAVALVRPGMVIGLGFGSTAAYATRMIAERLHQGDLNDIVGVPCAEGTAQLARELGIPLTTLDEVAAVDLTIDGA 90          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_CHLAA (Ribose-5-phosphate isomerase A OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rpiA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.840e-15
Identity = 41/81 (50.62%), Postives = 55/81 (67.90%), Query Frame = 2
Query:  260 KKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            K +AA  AV  V+ GM +GLG GSTAA+    I + L  G+L DIVG+P ++ T + A+ L IPLTTLD+  ++DL IDGA
Sbjct:   10 KAMAAAAAVALVRPGMVIGLGFGSTAAYATRMIAERLHQGDLNDIVGVPCAEGTAQLARELGIPLTTLDEVAAVDLTIDGA 90          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_RHOP2 (Ribose-5-phosphate isomerase A OS=Rhodopseudomonas palustris (strain HaA2) GN=rpiA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.321e-15
Identity = 40/87 (45.98%), Postives = 60/87 (68.97%), Query Frame = 2
Query:  242 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            + ++DLK+ AA +A+D V+ GM +GLGTGSTA   V+ +G+ ++ G   D++G+PTS+ T   A+   I LTTLD+   LDL +DGA
Sbjct:    1 MNKEDLKRQAAARALDEVRDGMKIGLGTGSTAKHFVELLGEKVRAG--LDVIGVPTSEVTRADAERCGIRLTTLDEIDRLDLTVDGA 85          
The following BLAST results are available for this feature:
BLAST of DN618149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
RPIA_PROMM2.837e-1550.59Ribose-5-phosphate isomerase A OS=Prochlorococcus ... [more]
RPIA_THET83.706e-1551.19Ribose-5-phosphate isomerase A OS=Thermus thermoph... [more]
RPIA_THET23.706e-1551.19Ribose-5-phosphate isomerase A OS=Thermus thermoph... [more]
RPIA_LACLA3.706e-1547.62Ribose-5-phosphate isomerase A OS=Lactococcus lact... [more]
RPIA_BACC13.706e-1550.60Ribose-5-phosphate isomerase A OS=Bacillus cereus ... [more]
RPIA_STRS74.840e-1551.22Ribose-5-phosphate isomerase A OS=Streptococcus eq... [more]
RPIA_STREM4.840e-1551.22Ribose-5-phosphate isomerase A OS=Streptococcus eq... [more]
RPIA_CHLSY4.840e-1550.62Ribose-5-phosphate isomerase A OS=Chloroflexus aur... [more]
RPIA_CHLAA4.840e-1550.62Ribose-5-phosphate isomerase A OS=Chloroflexus aur... [more]
RPIA_RHOP26.321e-1545.98Ribose-5-phosphate isomerase A OS=Rhodopseudomonas... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02C20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618149 ID=DN618149; Name=DN618149; organism=Citrus sinensis; type=EST; length=503bp
AGCCAAAGCCATCCAAAACACACACAGATAGATTGATCAACAACAACTTC
TCACAACTCACCTCTCATTTATTTTCCTCTCAAACTCACCCCATCACCAC
CACAGCCTCCGCCCAAGAAAAATGACTTCTTTATCCTTCCTCCCCACTCT
CCATCTCTCCACCTCCGCTCACTTCCTCCCACGCGCCCCCAAATCCCTCA
GACCACGCGCCATTTCCATCAAAGCCCAGGCCGTCCCGGCCCTCACCCAA
GACGACTTGAAGAAGCTCGCCGCCGACAAGGCCGTTGACTACGTCAAATC
CGGCATGGCCCTCGGCCTCGGTACCGGCTCCACCGCCGCCTTCGTCGTCG
ACAAGATCGGCCAACTCTTGAAAACCGGCGAGTTAAGGGACATCGTCGGA
ATCCCAACTTCAAAACGCACGGAAGAGCAAGCCAAGTCGCTTAACATTCC
CTTAACCACACTTGACGATCACCCATCACTGGATTTGGCCATTGACGGCG
CCG
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