DN618149

Overview
NameDN618149
Unique NameDN618149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_LACC3 (Ribose-5-phosphate isomerase A OS=Lactobacillus casei (strain ATCC 334) GN=rpiA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.321e-15
Identity = 40/87 (45.98%), Postives = 60/87 (68.97%), Query Frame = 2
Query:  242 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            + Q+ LK+ AA +A ++V+ GM +GLGTGST  ++V+ I Q +K   L ++ G+ TS RT +QA+SL IP+  LD+   +DL IDGA
Sbjct:    1 MDQNKLKQEAAQRAAEFVEDGMTIGLGTGSTVVYLVEAIAQRIKDEHL-NLTGVATSVRTRKQAESLGIPMKALDEVGQIDLTIDGA 86          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_STRE4 (Ribose-5-phosphate isomerase A OS=Streptococcus equi subsp. equi (strain 4047) GN=rpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.255e-15
Identity = 41/82 (50.00%), Postives = 57/82 (69.51%), Query Frame = 2
Query:  257 LKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            LKK+A   A  YV  GM +GLGTGSTA + V++IG+ +K   L+ +VG+ TS  T +QA+ L IPLT++DD   +DL +DGA
Sbjct:    4 LKKIAGVTAAQYVTDGMTIGLGTGSTAYYFVEEIGRRIKEEGLQ-VVGVTTSSVTTKQAEGLGIPLTSIDDIDCIDLTVDGA 84          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_RHOS5 (Ribose-5-phosphate isomerase A OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.255e-15
Identity = 44/84 (52.38%), Postives = 58/84 (69.05%), Query Frame = 2
Query:  251 DDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            D  K  AA +AVD+V+ GM LGLGTGSTAA++V  + + ++   LR + G+PTS RT E A+ L IP+ TLD+   LDL IDGA
Sbjct:    9 DTAKFAAARRAVDFVQDGMKLGLGTGSTAAWMVRCLAERVREEGLR-VQGVPTSSRTAELARELGIPVVTLDEARWLDLTIDGA 91          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_RHOPS (Ribose-5-phosphate isomerase A OS=Rhodopseudomonas palustris (strain BisB5) GN=rpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.255e-15
Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = 2
Query:  242 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            + ++DLK+ AA +A++ V+SGM LGLGTGSTA   V+ +G+ ++ G   D++G+PTS+ T   A+   I LTTLD+   LDL +DGA
Sbjct:    1 MDKEDLKRQAAARALEEVRSGMKLGLGTGSTARHFVELLGEKVRGG--LDVIGVPTSEVTRADAERCGIRLTTLDEIDRLDLTVDGA 85          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_PROM3 (Ribose-5-phosphate isomerase A OS=Prochlorococcus marinus (strain MIT 9303) GN=rpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.255e-15
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 2
Query:  248 QDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            Q  +K+  A  AV+ +K GM LGLG+GSTAA ++  +G  L +GELR+IVG+ TS + E  A  L IPL  L     +DLAIDGA
Sbjct:    5 QTQMKQAVAAAAVEQIKDGMVLGLGSGSTAALMIQALGAKLASGELREIVGVTTSFQGEVMAAELGIPLRNLTAVDRIDLAIDGA 89          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_LISMO (Ribose-5-phosphate isomerase A OS=Listeria monocytogenes GN=rpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.255e-15
Identity = 36/81 (44.44%), Postives = 58/81 (71.60%), Query Frame = 2
Query:  260 KKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            KK+A +KA +++K GM +GLGTGST  + ++K+G+++  G    I G+ TS+ T +QA++L IPL +L+D   +D+ IDGA
Sbjct:    5 KKIAGEKACEWIKDGMVVGLGTGSTVYYTIEKLGEMVNNG--LHITGVATSEETNKQAQNLGIPLKSLNDVTEIDITIDGA 83          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_LISMF (Ribose-5-phosphate isomerase A OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.255e-15
Identity = 36/81 (44.44%), Postives = 58/81 (71.60%), Query Frame = 2
Query:  260 KKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            KK+A +KA +++K GM +GLGTGST  + ++K+G+++  G    I G+ TS+ T +QA++L IPL +L+D   +D+ IDGA
Sbjct:    5 KKIAGEKACEWIKDGMVVGLGTGSTVYYTIEKLGEMVNNG--LHITGVATSEETSKQAQNLGIPLKSLNDVAEIDITIDGA 83          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_LISMC (Ribose-5-phosphate isomerase A OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.255e-15
Identity = 36/81 (44.44%), Postives = 58/81 (71.60%), Query Frame = 2
Query:  260 KKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            KK+A +KA +++K GM +GLGTGST  + ++K+G+++  G    I G+ TS+ T +QA++L IPL +L+D   +D+ IDGA
Sbjct:    5 KKIAGEKACEWIKDGMVVGLGTGSTVYYTIEKLGEMVNNG--LHITGVATSEETSKQAQNLGIPLKSLNDVAEIDITIDGA 83          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_LISIN (Ribose-5-phosphate isomerase A OS=Listeria innocua GN=rpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.255e-15
Identity = 36/81 (44.44%), Postives = 60/81 (74.07%), Query Frame = 2
Query:  260 KKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            KK+A +KA ++++ GM +GLGTGST  + ++K+G++++ G   +I G+ TS  TE+QA++L IPL +L+D   +D+ IDGA
Sbjct:    5 KKIAGEKACEWIEDGMVVGLGTGSTVYYTIEKLGEMVQKG--LNITGVSTSIETEQQARTLGIPLKSLNDVTKIDVTIDGA 83          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_STRPZ (Ribose-5-phosphate isomerase A OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=rpiA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.078e-14
Identity = 41/82 (50.00%), Postives = 57/82 (69.51%), Query Frame = 2
Query:  257 LKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            LKK+A   A  YV  GM +GLGTGSTA + V++IG+ +K   L+ +VG+ TS  T +QA+ L IPL ++DD  S+DL +DGA
Sbjct:    4 LKKIAGVTAAQYVTDGMTIGLGTGSTAYYFVEEIGRRVKQEGLQ-VVGVTTSSVTSKQAEGLGIPLKSIDDIDSIDLTVDGA 84          
The following BLAST results are available for this feature:
BLAST of DN618149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
RPIA_LACC36.321e-1545.98Ribose-5-phosphate isomerase A OS=Lactobacillus ca... [more]
RPIA_STRE48.255e-1550.00Ribose-5-phosphate isomerase A OS=Streptococcus eq... [more]
RPIA_RHOS58.255e-1552.38Ribose-5-phosphate isomerase A OS=Rhodobacter spha... [more]
RPIA_RHOPS8.255e-1547.13Ribose-5-phosphate isomerase A OS=Rhodopseudomonas... [more]
RPIA_PROM38.255e-1549.41Ribose-5-phosphate isomerase A OS=Prochlorococcus ... [more]
RPIA_LISMO8.255e-1544.44Ribose-5-phosphate isomerase A OS=Listeria monocyt... [more]
RPIA_LISMF8.255e-1544.44Ribose-5-phosphate isomerase A OS=Listeria monocyt... [more]
RPIA_LISMC8.255e-1544.44Ribose-5-phosphate isomerase A OS=Listeria monocyt... [more]
RPIA_LISIN8.255e-1544.44Ribose-5-phosphate isomerase A OS=Listeria innocua... [more]
RPIA_STRPZ1.078e-1450.00Ribose-5-phosphate isomerase A OS=Streptococcus py... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02C20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618149 ID=DN618149; Name=DN618149; organism=Citrus sinensis; type=EST; length=503bp
AGCCAAAGCCATCCAAAACACACACAGATAGATTGATCAACAACAACTTC
TCACAACTCACCTCTCATTTATTTTCCTCTCAAACTCACCCCATCACCAC
CACAGCCTCCGCCCAAGAAAAATGACTTCTTTATCCTTCCTCCCCACTCT
CCATCTCTCCACCTCCGCTCACTTCCTCCCACGCGCCCCCAAATCCCTCA
GACCACGCGCCATTTCCATCAAAGCCCAGGCCGTCCCGGCCCTCACCCAA
GACGACTTGAAGAAGCTCGCCGCCGACAAGGCCGTTGACTACGTCAAATC
CGGCATGGCCCTCGGCCTCGGTACCGGCTCCACCGCCGCCTTCGTCGTCG
ACAAGATCGGCCAACTCTTGAAAACCGGCGAGTTAAGGGACATCGTCGGA
ATCCCAACTTCAAAACGCACGGAAGAGCAAGCCAAGTCGCTTAACATTCC
CTTAACCACACTTGACGATCACCCATCACTGGATTTGGCCATTGACGGCG
CCG
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