DN618149

Overview
NameDN618149
Unique NameDN618149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_STRPJ (Ribose-5-phosphate isomerase A OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=rpiA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.137e-14
Identity = 39/84 (46.43%), Postives = 60/84 (71.43%), Query Frame = 2
Query:  251 DDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            ++LKK+A  KA ++VK GM +GLGTGSTA + V++IG+ +K   L+ I+ + TS  T +QA+ LNIPL ++D    +D+ +DGA
Sbjct:    2 ENLKKMAGIKAAEFVKDGMVVGLGTGSTAYYFVEEIGRRIKEEGLQ-IIAVTTSSVTTKQAEGLNIPLKSIDQVDFVDVTVDGA 84          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_DEIRA (Ribose-5-phosphate isomerase A OS=Deinococcus radiodurans GN=rpiA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.137e-14
Identity = 41/82 (50.00%), Postives = 58/82 (70.73%), Query Frame = 2
Query:  257 LKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            LKK AA ++V  V+SG  +GLGTGSTA + ++++G+ L  GEL  IVG+ TS+ +E+ A+ + IP   LD  P LD+AIDGA
Sbjct:    6 LKKEAALRSVALVQSGQRVGLGTGSTAKYAIEELGRKLAAGELSGIVGVSTSEASEKLAREVGIPTEPLDPRP-LDIAIDGA 86          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_SYNPW (Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain WH7803) GN=rpiA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.097e-14
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 2
Query:  248 QDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            Q+ +K+  AD AV   + GM +GLG+GSTAA ++  +G+ L  G+L DIVG+ TS + E  A  L IPL +L+    +DLAIDGA
Sbjct:    5 QNQMKQAVADAAVQQFRDGMVVGLGSGSTAALMIKGLGERLAAGQLSDIVGVTTSFQGEVLAAELGIPLRSLNAVDRIDLAIDGA 89          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_METEP (Ribose-5-phosphate isomerase A OS=Methylobacterium extorquens (strain PA1) GN=rpiA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.097e-14
Identity = 39/87 (44.83%), Postives = 57/87 (65.52%), Query Frame = 2
Query:  242 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            ++  DLK+ AA++A+  V+ GM LG+GTGSTAA  +  +G+ ++ G    + G+PTS+ T    +   IPL TL+D P LDL IDGA
Sbjct:    1 MSAPDLKRAAAERAIPLVEDGMRLGIGTGSTAAAFIKLLGERVRAG--LKVTGVPTSEATRIACEREGIPLATLEDLPELDLTIDGA 85          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_METC4 (Ribose-5-phosphate isomerase A OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=rpiA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.097e-14
Identity = 39/87 (44.83%), Postives = 57/87 (65.52%), Query Frame = 2
Query:  242 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            ++  DLK+ AA++A+  V+ GM LG+GTGSTAA  +  +G+ ++ G    + G+PTS+ T    +   IPL TL+D P LDL IDGA
Sbjct:    1 MSAPDLKRAAAERAIPLVEDGMRLGIGTGSTAAAFIKLLGERVRAG--LKVTGVPTSEATRIACEREGIPLATLEDLPELDLTIDGA 85          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_LACBA (Ribose-5-phosphate isomerase A OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rpiA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.097e-14
Identity = 40/87 (45.98%), Postives = 58/87 (66.67%), Query Frame = 2
Query:  242 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            + Q+ LK L   +AV YV+ GM LG+GTGST  +++D +G+ +K   L  I+G+ TS R+ +QA+SL I +  LD+   LDL IDGA
Sbjct:    1 MDQNALKALVGQEAVKYVEDGMILGIGTGSTVRYMIDALGERVKNEGLH-IIGVATSDRSAKQAESLGITIKELDEVDHLDLTIDGA 86          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_EXIS2 (Ribose-5-phosphate isomerase A OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=rpiA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.351e-14
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 2
Query:  260 KKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDG 499
            KK+ A+ A+  VK+GM LGLGTGST    +D +G+ +K G   ++ G+ TS  T EQAK LNIPL +L++   +DL IDG
Sbjct:    6 KKMLAEAAIKQVKNGMILGLGTGSTTRSFIDALGEWVKAG--GEVQGVATSNETVEQAKRLNIPLLSLEEATHIDLVIDG 83          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_RHOPB (Ribose-5-phosphate isomerase A OS=Rhodopseudomonas palustris (strain BisB18) GN=rpiA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.988e-14
Identity = 40/87 (45.98%), Postives = 59/87 (67.82%), Query Frame = 2
Query:  242 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            ++ D+LK+ AA  A+++V+ GM LGLGTGSTA   V+ +G+ ++ G   ++VG+PTS+ T   A    I LTTLD+   LDL +DGA
Sbjct:    1 MSSDELKRQAAAAALEHVRDGMKLGLGTGSTAKHFVELLGERVRGG--LNVVGVPTSEVTRADALRCGIALTTLDEVDRLDLTVDGA 85          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_CYAP7 (Ribose-5-phosphate isomerase A OS=Cyanothece sp. (strain PCC 7424) GN=rpiA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.988e-14
Identity = 38/82 (46.34%), Postives = 53/82 (64.63%), Query Frame = 2
Query:  257 LKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            +K+     A   V S   +GLGTGST A+ +  IG+ ++TGEL+++VG+PTS   E  A+   +PLTTLD    +DLAIDGA
Sbjct:   11 MKQEVGKAAAQRVHSDTIIGLGTGSTTAYAIQYIGERIQTGELKNVVGVPTSFGAEVLARKYGVPLTTLDVIDKMDLAIDGA 92          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_METB6 (Ribose-5-phosphate isomerase A OS=Methanoregula boonei (strain 6A8) GN=rpiA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.127e-14
Identity = 38/81 (46.91%), Postives = 55/81 (67.90%), Query Frame = 2
Query:  260 KKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            K+ A  +A + V+ GM +GLGTGST  + ++ +   ++ G    +VG+PTS +T  +A+   IPLTTLDD+P LDLAIDGA
Sbjct:   12 KRAAGYQAAEMVEDGMVIGLGTGSTVFYAIECLSGRIRDG--LSVVGVPTSYQTAMKAREYGIPLTTLDDNPVLDLAIDGA 90          
The following BLAST results are available for this feature:
BLAST of DN618149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
RPIA_STRPJ3.137e-1446.43Ribose-5-phosphate isomerase A OS=Streptococcus pn... [more]
RPIA_DEIRA3.137e-1450.00Ribose-5-phosphate isomerase A OS=Deinococcus radi... [more]
RPIA_SYNPW4.097e-1447.06Ribose-5-phosphate isomerase A OS=Synechococcus sp... [more]
RPIA_METEP4.097e-1444.83Ribose-5-phosphate isomerase A OS=Methylobacterium... [more]
RPIA_METC44.097e-1444.83Ribose-5-phosphate isomerase A OS=Methylobacterium... [more]
RPIA_LACBA4.097e-1445.98Ribose-5-phosphate isomerase A OS=Lactobacillus br... [more]
RPIA_EXIS25.351e-1448.75Ribose-5-phosphate isomerase A OS=Exiguobacterium ... [more]
RPIA_RHOPB6.988e-1445.98Ribose-5-phosphate isomerase A OS=Rhodopseudomonas... [more]
RPIA_CYAP76.988e-1446.34Ribose-5-phosphate isomerase A OS=Cyanothece sp. (... [more]
RPIA_METB69.127e-1446.91Ribose-5-phosphate isomerase A OS=Methanoregula bo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02C20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618149 ID=DN618149; Name=DN618149; organism=Citrus sinensis; type=EST; length=503bp
AGCCAAAGCCATCCAAAACACACACAGATAGATTGATCAACAACAACTTC
TCACAACTCACCTCTCATTTATTTTCCTCTCAAACTCACCCCATCACCAC
CACAGCCTCCGCCCAAGAAAAATGACTTCTTTATCCTTCCTCCCCACTCT
CCATCTCTCCACCTCCGCTCACTTCCTCCCACGCGCCCCCAAATCCCTCA
GACCACGCGCCATTTCCATCAAAGCCCAGGCCGTCCCGGCCCTCACCCAA
GACGACTTGAAGAAGCTCGCCGCCGACAAGGCCGTTGACTACGTCAAATC
CGGCATGGCCCTCGGCCTCGGTACCGGCTCCACCGCCGCCTTCGTCGTCG
ACAAGATCGGCCAACTCTTGAAAACCGGCGAGTTAAGGGACATCGTCGGA
ATCCCAACTTCAAAACGCACGGAAGAGCAAGCCAAGTCGCTTAACATTCC
CTTAACCACACTTGACGATCACCCATCACTGGATTTGGCCATTGACGGCG
CCG
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