DN618148

Overview
NameDN618148
Unique NameDN618148
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_STRT2 (Ribose-5-phosphate isomerase A OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rpiA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.373e-22
Identity = 66/141 (46.81%), Postives = 84/141 (59.57%), Query Frame = -3
Query:  214 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 636
            DP+LN +KG GGALL EK+V   +K ++ V DESK+V  LG  KL  PVEVVQ    Y   RL   F   G +   R  E G  ++TD  N+IIDL     I + V+ G E+  + GVVEHGLF  M   VI+AGK GV++
Sbjct:   88 DPQLNGIKGGGGALLMEKIVATPTKKYIWVVDESKMVDQLGAFKL--PVEVVQ----YGADRLYLDFESKGYKPSFRVTEQGDRFVTDMKNFIIDLDL-GKINNPVALGDELKAMTGVVEHGLFNGMVNKVIVAGKDGVKI 221          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_STRT1 (Ribose-5-phosphate isomerase A OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rpiA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.373e-22
Identity = 66/141 (46.81%), Postives = 84/141 (59.57%), Query Frame = -3
Query:  214 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 636
            DP+LN +KG GGALL EK+V   +K ++ V DESK+V  LG  KL  PVEVVQ    Y   RL   F   G +   R  E G  ++TD  N+IIDL     I + V+ G E+  + GVVEHGLF  M   VI+AGK GV++
Sbjct:   88 DPQLNGIKGGGGALLMEKIVATPTKKYIWVVDESKMVDQLGAFKL--PVEVVQ----YGADRLYLDFESKGYKPSFRVTEQGDRFVTDMKNFIIDLDL-GKINNPVALGDELKAMTGVVEHGLFNGMVNKVIVAGKDGVKI 221          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_STRA3 (Ribose-5-phosphate isomerase A OS=Streptococcus agalactiae serotype III GN=rpiA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.814e-22
Identity = 67/144 (46.53%), Postives = 84/144 (58.33%), Query Frame = -3
Query:  205 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 636
            DP+ N +KG GGALL EK+V   +K ++ V DESKLV  LG  KL  PVEVV    +Y   RL  +F+  G     RE E G  +ITD  NYIIDL  +  I+D      E+    GVVEHGLF  M   VI+AGK G+++  K
Sbjct:   88 DPDFNGIKGGGGALLMEKIVATPTKEYIWVVDESKLVETLGAFKL--PVEVV----RYGSERLFRVFKSKGYCPSFRETE-GDRFITDMGNYIIDLDLK-KIEDPKQLANELDHTVGVVEHGLFNSMVNKVIVAGKNGLDILEK 223          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_RHOPS (Ribose-5-phosphate isomerase A OS=Rhodopseudomonas palustris (strain BisB5) GN=rpiA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.814e-22
Identity = 59/141 (41.84%), Postives = 86/141 (60.99%), Query Frame = -3
Query:  220 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGC--EAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGV 636
            D  L L+KG GGALLREK+V AAS   +V+ADESK V  LG  K  +PVEV+ F        ++  F ++G   + KLR+GE G  ++TD  ++I+D +    I D       + ++ GVVEHGLF+ +A+ V++AG  G+
Sbjct:   89 DTRLELIKGGGGALLREKIVAAASDRMIVIADESKWVDCLG--KFPLPVEVIPFGLAATRRAIEKAFTQVGAAGQLKLRDGEAGHAFVTDGGHWIVDAHLGR-IPDAPRLAKLLSEIPGVVEHGLFIGIASTVVLAGTEGI 226          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_STRA5 (Ribose-5-phosphate isomerase A OS=Streptococcus agalactiae serotype V GN=rpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.900e-22
Identity = 67/144 (46.53%), Postives = 84/144 (58.33%), Query Frame = -3
Query:  205 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 636
            DP+ N +KG GGALL EK+V   +K ++ V DESKLV  LG  KL  PVEVV    +Y   RL  +F+  G     RE E G  +ITD  NYIIDL  +  I+D      E+    GVVEHGLF  M   VI+AGK G+++  K
Sbjct:   88 DPDFNGIKGGGGALLMEKIVATPTKEYIWVVDESKLVETLGAFKL--PVEVV----RYGSERLFRVFKSKGYCPSFRETE-GDRFITDMGNYIIDLDLK-KIEDPKQLANELDHTVGVVEHGLFNGMVNKVIVAGKNGLDILEK 223          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_STRA1 (Ribose-5-phosphate isomerase A OS=Streptococcus agalactiae serotype Ia GN=rpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.900e-22
Identity = 67/144 (46.53%), Postives = 84/144 (58.33%), Query Frame = -3
Query:  205 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 636
            DP+ N +KG GGALL EK+V   +K ++ V DESKLV  LG  KL  PVEVV    +Y   RL  +F+  G     RE E G  +ITD  NYIIDL  +  I+D      E+    GVVEHGLF  M   VI+AGK G+++  K
Sbjct:   88 DPDFNGIKGGGGALLMEKIVATPTKEYIWVVDESKLVETLGAFKL--PVEVV----RYGSERLFRVFKSKGYCPSFRETE-GDRFITDMGNYIIDLDLK-KIEDPKQLANELDHTVGVVEHGLFNGMVNKVIVAGKNGLDILEK 223          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_BACAN (Ribose-5-phosphate isomerase A OS=Bacillus anthracis GN=rpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.900e-22
Identity = 57/140 (40.71%), Postives = 83/140 (59.29%), Query Frame = -3
Query:  217 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 636
            D  L L+KG GGALLREK+V ++SK  +++ DESK+V+ LG     +P+E++ F WK    ++Q     LGC+  LR  +N + +ITDN N IID  F   I         +  + GVVE GLF++M +  II  K G++
Sbjct:   86 DSNLQLIKGGGGALLREKIVASSSKELIIIVDESKVVTRLG--TFPLPIEIIPFAWKQTESKIQ----SLGCQTTLRL-KNNETFITDNNNMIIDCIFPNHIPTPSDLHKRLKMITGVVETGLFVNMTSKAIIGTKNGIQ 218          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_RHIEC (Ribose-5-phosphate isomerase A OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rpiA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.162e-21
Identity = 63/140 (45.00%), Postives = 86/140 (61.43%), Query Frame = -3
Query:  223 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGC--EAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 636
            DP L L+KG GGALLREK+V AAS+  +V+ADESKLV  LG    A+P+EV  F      + ++ +   LG   E  LR+  +G+ + TD  ++IID  F   I D  +  +E+  + GVVEHGLF++MA   IIAG  G
Sbjct:   89 DPALRLIKGGGGALLREKIVAAASQRMIVIADESKLVETLGA--FALPIEVNPFGLVSTRIAIEKVAARLGLSGELNLRQSGDGE-FTTDGGHHIIDASFGR-IPDAEALSSELNSIPGVVEHGLFINMAALAIIAGPAG 224          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_BACHK (Ribose-5-phosphate isomerase A OS=Bacillus thuringiensis subsp. konkukian GN=rpiA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.162e-21
Identity = 56/140 (40.00%), Postives = 83/140 (59.29%), Query Frame = -3
Query:  217 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 636
            D  L L+KG GGALLREK+V ++SK  +++ DESK+V+ LG     +P+E++ F WK    ++Q     LGC+  LR  +N + +ITDN N I+D  F   I         +  + GVVE GLF++M +  II  K G++
Sbjct:   86 DSNLQLIKGGGGALLREKIVASSSKELIIIVDESKVVTRLG--TFPLPIEIIPFAWKQTESKIQ----SLGCQTTLRL-KNNETFITDNNNMIVDCIFPNHIPTPSDLHKRLKMITGVVETGLFVNMTSKAIIGTKNGIQ 218          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_BACCZ (Ribose-5-phosphate isomerase A OS=Bacillus cereus (strain ZK / E33L) GN=rpiA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.162e-21
Identity = 57/140 (40.71%), Postives = 83/140 (59.29%), Query Frame = -3
Query:  217 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 636
            D  L L+KG GGALLREK+V ++SK  +++ DESK+V+ LG     +P+E++ F WK    ++Q     LGC+  LR  +N + +ITDN N IID  F   I         +  + GVVE GLF++M +  II  K G++
Sbjct:   86 DSNLQLIKGGGGALLREKIVASSSKELIIIIDESKVVTRLG--TFPLPIEIIPFAWKQTESKIQ----SLGCQTTLRL-KNNETFITDNNNMIIDCIFPNHIPTPSDLHKRLKMITGVVETGLFVNMTSKAIIGTKNGIQ 218          
The following BLAST results are available for this feature:
BLAST of DN618148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 305
Match NameE-valueIdentityDescription
RPIA_STRT21.373e-2246.81Ribose-5-phosphate isomerase A OS=Streptococcus th... [more]
RPIA_STRT11.373e-2246.81Ribose-5-phosphate isomerase A OS=Streptococcus th... [more]
RPIA_STRA36.814e-2246.53Ribose-5-phosphate isomerase A OS=Streptococcus ag... [more]
RPIA_RHOPS6.814e-2241.84Ribose-5-phosphate isomerase A OS=Rhodopseudomonas... [more]
RPIA_STRA58.900e-2246.53Ribose-5-phosphate isomerase A OS=Streptococcus ag... [more]
RPIA_STRA18.900e-2246.53Ribose-5-phosphate isomerase A OS=Streptococcus ag... [more]
RPIA_BACAN8.900e-2240.71Ribose-5-phosphate isomerase A OS=Bacillus anthrac... [more]
RPIA_RHIEC1.162e-2145.00Ribose-5-phosphate isomerase A OS=Rhizobium etli (... [more]
RPIA_BACHK1.162e-2140.00Ribose-5-phosphate isomerase A OS=Bacillus thuring... [more]
RPIA_BACCZ1.162e-2140.71Ribose-5-phosphate isomerase A OS=Bacillus cereus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02C20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618148 ID=DN618148; Name=DN618148; organism=Citrus sinensis; type=EST; length=638bp
TTTTTCGAGCAACGGAACAATTTATTTATGTTTTATTCCACATCTGCCCA
ATTCAAGATACAAAATTTCTACTGAGAACCCGCATTGCCAAATCTAACAT
TTAAACTAAAATTAAGTCCAAAAAAAAATATCAGAGTAATGAACAACAAG
AAGAAGGACAAATTATAAAAAACCAAATTTTTTAAATCCTCACCGCCATC
ATCACTTGCTCTTAACTTCAACACCAGTCTTCCCAGCTATGATCACAGCA
GTCGCCATATCCAAAAACAACCCGTGTTCCACAACTCCTTCGAGCTTCCC
AATCTCCGTCCCAGCTGAAACCCCGTCTTTAATGGGCGTCTCGAAATACA
AATCGATAATGTAGTTAAAATTATCAGTGATATAAGGCTTCCCGTTTTCC
CCTTCTCTAAGCTTGGCCTCACAACCCAGTTCCCTGAACAAGTCTTGAAG
CCTAACCAAATTGTATTTCCAGCAAAACTGAACCACTTCAACTGGCATCG
CAAGCTTACTCCCACCGAGTCCGCTCACTAATTTACTCTCATCAGCCACA
ACAACGAAGCTTTTCGACGCAGCTTCCACCATCTTCTCTCTCAAAAGCGC
CCCGCCTCGGCCTTTAACGAGGTTCAATTCTGGGTCAA
back to top