DN618148

Overview
NameDN618148
Unique NameDN618148
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_THIDA (Ribose-5-phosphate isomerase A OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rpiA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.245e-15
Identity = 58/136 (42.65%), Postives = 79/136 (58.09%), Query Frame = -3
Query:  217 LVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG-KTGVE 621
            ++KG GGAL REK+V A SK FV +AD+SKLV  LG  K  +PVEV+     +    L     +LG + +LREG     + TDN N I+D++    I D VS  T I ++ GVV +GLF      V++ G  TGV+
Sbjct:   91 MIKGGGGALTREKIVAACSKQFVCIADDSKLVDVLG--KFPLPVEVIPMARSHVARELV----KLGGQPRLREG-----FTTDNGNVILDVH-NLSIIDPVSLETAINQIVGVVTNGLFARRGADVLLLGTSTGVK 214          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_SYNPW (Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain WH7803) GN=rpiA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.245e-15
Identity = 49/134 (36.57%), Postives = 76/134 (56.72%), Query Frame = -3
Query:  238 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREG-ENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVII 636
            DP   L+KG G   ++EK+V A +  F+VV D +KLV  L    L +PVEV+   W    V++    + +G +A+LR       P +TD  N ++D+ FE  I D  S   EI  + GV+E+GLF+++A  V++
Sbjct:   93 DPAFQLIKGGGACHVQEKLVAARADRFIVVVDSTKLVERLNLGFL-LPVEVLPGAW----VQISQQLKAMGGDAELRMATRKAGPVVTDQGNLVLDVRFEGGIADPASLEKEINNIPGVLENGLFVNLADEVLV 221          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_METJA (Ribose-5-phosphate isomerase A OS=Methanocaldococcus jannaschii GN=rpiA PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.245e-15
Identity = 56/142 (39.44%), Postives = 81/142 (57.04%), Query Frame = -3
Query:  205 LNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGK-PYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 627
            L L+KG GG   +EK+V+  +  FVV+ DESKLV  L G K  +PVEV+   ++  +  L     E+G EA +R G+  + P ITDN N IID++    I D +    EI  + GVVE+G+F  +   V++  K GV+   K
Sbjct:   93 LFLIKGGGGCHTQEKIVDYNANEFVVLVDESKLVKKL-GEKFPIPVEVIPSAYRVVIRALS----EMGGEAVIRLGDRKRGPVITDNGNMIIDVFMN--IDDAIELEKEINNIPGVVENGIFTKV-DKVLVGTKKGVKTLKK 226          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_CANAL (Ribose-5-phosphate isomerase OS=Candida albicans GN=RKI1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.245e-15
Identity = 62/150 (41.33%), Postives = 87/150 (58.00%), Query Frame = -3
Query:  205 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGS-KLAMPVEVVQFCWKYNLVRLQDLFRELGCE-AKLREGENGK--PYITDNFNYIIDLYF-ETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG-VEVKSK 636
            DP+LNL+KG G  L +EK+V A++K FVVVAD  K    LG S +  +P+E+V     Y+ + +Q+L ++LG +   LR+G   K  P ITDN N+++D  F E  I +      +I  L GVVE GLF +MA       + G V V SK
Sbjct:  117 DPQLNLIKGGGACLFQEKLVAASAKKFVVVADYRKKSDKLGQSWRQGVPIEIVPN--SYSKI-IQELSKKLGAKNVDLRQGGKAKAGPIITDNNNFLLDADFGEIEIDNVGKLHEQIKLLVGVVETGLFTNMANKAYFGEEDGSVSVWSK 263          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_ANAVT (Ribose-5-phosphate isomerase A OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpiA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.245e-15
Identity = 49/134 (36.57%), Postives = 81/134 (60.45%), Query Frame = -3
Query:  238 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREG-ENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVII 636
            DP+ NL+KG G A  REK+V+  +  F+VV D  KLV  L GS  A+PVEV+       +  + +  ++LG + +LR G +   P ITD  N+++D+ F++ I D V+    +  + GV+E+G+F++ A  V++
Sbjct:   96 DPQKNLIKGGGAAHTREKVVDYLANQFIVVVDSGKLVDRL-GSVFAVPVEVIPMA----ITPVTNAIKQLGGKPELRMGVKKAGPVITDQGNFVLDVRFDS-IDDPVNLEKILNNIPGVLENGIFVNCADIVLV 223          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_PROM1 (Ribose-5-phosphate isomerase A OS=Prochlorococcus marinus (strain NATL1A) GN=rpiA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.626e-15
Identity = 52/142 (36.62%), Postives = 77/142 (54.23%), Query Frame = -3
Query:  214 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGE-NGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 636
            DP+  L+KG G   ++EK+V A +K F+VV D +KLV  L      +PVEV+   WK    ++Q     LG E  LR  +    P +TD  N I+DL F   I       T+I  + GV+E+GLF+++   V++ GK   +V
Sbjct:   92 DPKFQLIKGGGACHVQEKLVAALAKKFIVVVDSTKLVEKL-NLDFKLPVEVLPSAWK----QVQKTLINLGGEGNLRMAQKKAGPIVTDQGNLILDLTFRNGIDQPELLETQINNIPGVLENGLFVNLTDEVLV-GKVESDV 227          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_BARBK (Ribose-5-phosphate isomerase A OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rpiA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.626e-15
Identity = 50/138 (36.23%), Postives = 81/138 (58.70%), Query Frame = -3
Query:  223 PELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENG-KPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 633
            P + L+KG GGALLREK+V AAS   +++ADE+K+V  LG    A+P+ V QF        ++ + + LG   K+    NG  P+ TD+ ++I D  +   ++  + +   + ++ GV+EHGLF+ +A+  IIA   G
Sbjct:   90 PNMTLIKGGGGALLREKIVAAASHEMLIIADETKVVKTLGA--FALPIAVNQFGLSVTRSAIEKMAKGLGLSGKVTLRMNGDNPFKTDDGHFIFDASWGHIVQPKLLSNA-LFEIPGVIEHGLFVGLASRSIIAMADG 224          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_SYNS3 (Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain CC9311) GN=rpiA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.123e-15
Identity = 48/134 (35.82%), Postives = 77/134 (57.46%), Query Frame = -3
Query:  238 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREG-ENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVII 636
            DP   L+KG G   ++EK+V   ++ F+VV D +KLV  L    L +PVEV+   W    V++Q   + +G  A+LR       P +TD  N ++D+ FE  I D ++   +I  L GV+E+GLF+++A  V++
Sbjct:   93 DPSFQLIKGGGACHVQEKLVADRAERFIVVVDSTKLVRCLNLDFL-LPVEVLPGAW----VQVQSRLKSMGGVAELRMATRKAGPVVTDQGNLVLDVRFENGISDPIALERDINNLPGVLENGLFVNLADEVLV 221          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_ROSDO (Ribose-5-phosphate isomerase A OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rpiA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.123e-15
Identity = 55/146 (37.67%), Postives = 82/146 (56.16%), Query Frame = -3
Query:  211 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRE---LGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIA-GKTGVEVK 636
            D   NL+KG GGALL EK+V A+S   VV+AD  K V  LG     +P+EV+ F  +     + +       LG ++ LR  +  KP++TD  N+IIDL+ +  I D       + ++ GVVE+GLF+D+   V++  G   VEV+
Sbjct:   95 DGAFNLIKGGGGALLHEKVVAASSDRMVVIADVGKEVETLGA--FPLPIEVIPFGLQTTHALVDETLVSMDVLGRDSSLRM-DGDKPFVTDEGNHIIDLHLKR-IGDARQLALTLNQVPGVVENGLFIDICDTVVLGFGDGKVEVR 236          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_BARHE (Ribose-5-phosphate isomerase A OS=Bartonella henselae GN=rpiA PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.123e-15
Identity = 49/134 (36.57%), Postives = 79/134 (58.96%), Query Frame = -3
Query:  235 PELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENG-KPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIA 633
            PE+ L+KG GGALL EK+V +AS++  V+ADE+K+V  LG    A+P+EV  F      + ++     LG   ++    NG  P+ TD  ++I D ++   ++  + +   +  + GVVEHGLFL +A+  I+A
Sbjct:   90 PEMTLIKGGGGALLHEKIVASASRAMFVIADETKMVKTLGA--FALPIEVNPFGIHATRIAIEKAADNLGLSGEITLRMNGDDPFKTDGGHFIFDAFWGRILQPKLLSEALLA-IPGVVEHGLFLGLASRAIVA 220          
The following BLAST results are available for this feature:
BLAST of DN618148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 305
Match NameE-valueIdentityDescription
RPIA_THIDA1.245e-1542.65Ribose-5-phosphate isomerase A OS=Thiobacillus den... [more]
RPIA_SYNPW1.245e-1536.57Ribose-5-phosphate isomerase A OS=Synechococcus sp... [more]
RPIA_METJA1.245e-1539.44Ribose-5-phosphate isomerase A OS=Methanocaldococc... [more]
RPIA_CANAL1.245e-1541.33Ribose-5-phosphate isomerase OS=Candida albicans G... [more]
RPIA_ANAVT1.245e-1536.57Ribose-5-phosphate isomerase A OS=Anabaena variabi... [more]
RPIA_PROM11.626e-1536.62Ribose-5-phosphate isomerase A OS=Prochlorococcus ... [more]
RPIA_BARBK1.626e-1536.23Ribose-5-phosphate isomerase A OS=Bartonella bacil... [more]
RPIA_SYNS32.123e-1535.82Ribose-5-phosphate isomerase A OS=Synechococcus sp... [more]
RPIA_ROSDO2.123e-1537.67Ribose-5-phosphate isomerase A OS=Roseobacter deni... [more]
RPIA_BARHE2.123e-1536.57Ribose-5-phosphate isomerase A OS=Bartonella hense... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02C20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618148 ID=DN618148; Name=DN618148; organism=Citrus sinensis; type=EST; length=638bp
TTTTTCGAGCAACGGAACAATTTATTTATGTTTTATTCCACATCTGCCCA
ATTCAAGATACAAAATTTCTACTGAGAACCCGCATTGCCAAATCTAACAT
TTAAACTAAAATTAAGTCCAAAAAAAAATATCAGAGTAATGAACAACAAG
AAGAAGGACAAATTATAAAAAACCAAATTTTTTAAATCCTCACCGCCATC
ATCACTTGCTCTTAACTTCAACACCAGTCTTCCCAGCTATGATCACAGCA
GTCGCCATATCCAAAAACAACCCGTGTTCCACAACTCCTTCGAGCTTCCC
AATCTCCGTCCCAGCTGAAACCCCGTCTTTAATGGGCGTCTCGAAATACA
AATCGATAATGTAGTTAAAATTATCAGTGATATAAGGCTTCCCGTTTTCC
CCTTCTCTAAGCTTGGCCTCACAACCCAGTTCCCTGAACAAGTCTTGAAG
CCTAACCAAATTGTATTTCCAGCAAAACTGAACCACTTCAACTGGCATCG
CAAGCTTACTCCCACCGAGTCCGCTCACTAATTTACTCTCATCAGCCACA
ACAACGAAGCTTTTCGACGCAGCTTCCACCATCTTCTCTCTCAAAAGCGC
CCCGCCTCGGCCTTTAACGAGGTTCAATTCTGGGTCAA
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