DN618148

Overview
NameDN618148
Unique NameDN618148
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_THERP (Ribose-5-phosphate isomerase A OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=rpiA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.518e-21
Identity = 60/138 (43.48%), Postives = 85/138 (61.59%), Query Frame = -3
Query:  214 LNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 627
            L L+KGRGGAL+REK+V   ++  V++ D+SKLV+ L G++  +PVEVV F W++    L+D    LG    LR    G P+ +DN N I+D+ F   I D       I  L GV++HGLFLDMA  VI+  +TG+ +
Sbjct:   93 LGLLKGRGGALVREKLVARMARRLVIIIDDSKLVAAL-GARFPLPVEVVPFGWRWCARWLED----LGGRPTLRCRPTGHPFRSDNGNLILDVAFGA-IADPAWLDRTIKMLPGVIDHGLFLDMADLVIVGSETGIRL 224          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_STRPI (Ribose-5-phosphate isomerase A OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=rpiA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.518e-21
Identity = 63/141 (44.68%), Postives = 86/141 (60.99%), Query Frame = -3
Query:  214 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 636
            D + N +KG GGALL EK+V   SK ++ V DESKLV  LG  KL  PVEVVQ    Y   ++   F   G +   RE ++G+ ++TD  N+IIDL  +  I+D +  G E+  + GVVEHGLF  M   VI+AG+ GV++
Sbjct:   88 DSQFNGIKGGGGALLMEKIVATPSKEYIWVVDESKLVDKLGAFKL--PVEVVQ----YGAEQIFRRFERAGYKPSFRE-KDGQRFVTDMQNFIIDLALDV-IEDPIVFGQELDHVVGVVEHGLFNQMVDKVIVAGRDGVQI 220          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_RHILW (Ribose-5-phosphate isomerase A OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rpiA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.518e-21
Identity = 63/140 (45.00%), Postives = 86/140 (61.43%), Query Frame = -3
Query:  223 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGC--EAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 636
            DP L L+KG GGALLREK+V AAS+  +V+ADESKLV  LG    A+P+EV  F      + ++ +   LG   E  LR+  +G+ + TD  ++IID  F   I D  +  +E+  + GVVEHGLF++MA   IIAG  G
Sbjct:   89 DPALRLIKGGGGALLREKIVAAASERMIVIADESKLVDTLGA--YALPIEVNPFGLVSTRIAIEKVAARLGLAGELSLRQSGDGE-FTTDGGHHIIDASFGR-IPDAEALSSELNSIPGVVEHGLFINMAALAIIAGPAG 224          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_RHIE6 (Ribose-5-phosphate isomerase A OS=Rhizobium etli (strain CIAT 652) GN=rpiA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.518e-21
Identity = 63/140 (45.00%), Postives = 86/140 (61.43%), Query Frame = -3
Query:  223 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGC--EAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 636
            DP L L+KG GGALLREK+V AAS+  +V+ADESKLV  LG    A+P+EV  F      + ++ +   LG   E  LR+  +G+ + TD  ++IID  F   I D  +  +E+  + GVVEHGLF++MA   IIAG  G
Sbjct:   89 DPALRLIKGGGGALLREKIVAAASERMIVIADESKLVDTLGA--YALPIEVNPFGLVSTRIAIEKVAARLGLSGELSLRQSGDGE-FTTDGGHHIIDASFGR-IPDAEALSSELNSIPGVVEHGLFINMAALAIIAGPAG 224          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_NITHX (Ribose-5-phosphate isomerase A OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rpiA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.518e-21
Identity = 56/143 (39.16%), Postives = 87/143 (60.84%), Query Frame = -3
Query:  214 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKL--REGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 636
            DP+LNL+KG GGALLREK+V AAS+  +V+ADE+K V+GLG  +  +P+EV+ F        + + F + G   ++  R+G +G  ++TD  ++I D +    I D       +  + GVVEHGLF+ +A   ++AG  G+ V
Sbjct:   89 DPDLNLIKGGGGALLREKIVAAASERMIVIADETKWVAGLG--RFPLPIEVIPFGLAATRRAIAEAFTKAGASGQMVVRKGPDGLAFVTDGGHWIFDAHL-GQIPDASHLAGLLNPIPGVVEHGLFIGLARVAMLAGAQGIRV 228          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_DINSH (Ribose-5-phosphate isomerase A OS=Dinoroseobacter shibae (strain DFL 12) GN=rpiA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.518e-21
Identity = 61/141 (43.26%), Postives = 85/141 (60.28%), Query Frame = -3
Query:  223 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFREL---GCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 636
            DP LNL+KG GGALL+EK+V  AS   +V+ D SK V+ LG     +PVEV++F W+     +++    +   G EA LR  ENG PY+TD  N+I+DL+ E  I +       + +L GVVE+GLFLD+   V+I    G
Sbjct:   95 DPTLNLIKGGGGALLQEKIVATASDRMIVITDASKAVATLGA--FPLPVEVIRFGWETTRTLIEETLVNVDVGGREAILRM-ENGMPYVTDEGNFIVDLHLER-IGNPRQVSLVLNQLPGVVENGLFLDICDVVVIGKSDG 231          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_STRZJ (Ribose-5-phosphate isomerase A OS=Streptococcus pneumoniae (strain JJA) GN=rpiA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.589e-21
Identity = 62/143 (43.36%), Postives = 88/143 (61.54%), Query Frame = -3
Query:  208 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKS 636
            D + N +KG GGALL EK+V   SK ++ V DESKLV  LG  KL  PVEVVQ    Y   ++   F   G +   RE ++G+ ++TD  N+IIDL  +  I++ ++ G E+  + GVVEHGLF  M   VI+AG+ GV++ +
Sbjct:   88 DSQFNGIKGGGGALLMEKVVATPSKEYIWVVDESKLVEKLGAFKL--PVEVVQ----YGAEQVFRRFERAGYKPSFRE-KDGQRFVTDMQNFIIDLALDV-IENPIAFGQELDHVVGVVEHGLFNQMVDKVIVAGRDGVQIST 222          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_STRPJ (Ribose-5-phosphate isomerase A OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=rpiA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.589e-21
Identity = 62/143 (43.36%), Postives = 88/143 (61.54%), Query Frame = -3
Query:  208 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKS 636
            D + N +KG GGALL EK+V   SK ++ V DESKLV  LG  KL  PVEVVQ    Y   ++   F   G +   RE ++G+ ++TD  N+IIDL  +  I++ ++ G E+  + GVVEHGLF  M   VI+AG+ GV++ +
Sbjct:   88 DSQFNGIKGGGGALLMEKVVATPSKEYIWVVDESKLVEKLGAFKL--PVEVVQ----YGAEQVFRRFERAGYKPSFRE-KDGQRFVTDMQNFIIDLALDV-IENPIAFGQELDHVVGVVEHGLFNQMVDKVIVAGRDGVQIST 222          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_CHLSY (Ribose-5-phosphate isomerase A OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rpiA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.589e-21
Identity = 57/140 (40.71%), Postives = 86/140 (61.43%), Query Frame = -3
Query:  217 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 636
            DP+L+L+KG GGALLREKMV  AS+   ++ D+SKL   L G++ A+P+EVV F W+     L+      G   +LR   +G+P+ TD  N I+D +   P+ D  +   ++    G+VEHGLF+ +AT + +AG  GV+
Sbjct:   94 DPQLSLIKGGGGALLREKMVAQASRRVAIIVDDSKLSPAL-GTRFALPLEVVDFGWRATARWLE----AQGGTVQLRLRADGQPFRTDQGNLILD-WKCGPLNDPAALAAQLSARAGIVEHGLFIGLATDLFVAGPDGVQ 227          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_CHLAA (Ribose-5-phosphate isomerase A OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rpiA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.589e-21
Identity = 57/140 (40.71%), Postives = 86/140 (61.43%), Query Frame = -3
Query:  217 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 636
            DP+L+L+KG GGALLREKMV  AS+   ++ D+SKL   L G++ A+P+EVV F W+     L+      G   +LR   +G+P+ TD  N I+D +   P+ D  +   ++    G+VEHGLF+ +AT + +AG  GV+
Sbjct:   94 DPQLSLIKGGGGALLREKMVAQASRRVAIIVDDSKLSPAL-GTRFALPLEVVDFGWRATARWLE----AQGGTVQLRLRADGQPFRTDQGNLILD-WKCGPLNDPAALAAQLSARAGIVEHGLFIGLATDLFVAGPDGVQ 227          
The following BLAST results are available for this feature:
BLAST of DN618148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 305
Match NameE-valueIdentityDescription
RPIA_THERP1.518e-2143.48Ribose-5-phosphate isomerase A OS=Thermomicrobium ... [more]
RPIA_STRPI1.518e-2144.68Ribose-5-phosphate isomerase A OS=Streptococcus pn... [more]
RPIA_RHILW1.518e-2145.00Ribose-5-phosphate isomerase A OS=Rhizobium legumi... [more]
RPIA_RHIE61.518e-2145.00Ribose-5-phosphate isomerase A OS=Rhizobium etli (... [more]
RPIA_NITHX1.518e-2139.16Ribose-5-phosphate isomerase A OS=Nitrobacter hamb... [more]
RPIA_DINSH1.518e-2143.26Ribose-5-phosphate isomerase A OS=Dinoroseobacter ... [more]
RPIA_STRZJ2.589e-2143.36Ribose-5-phosphate isomerase A OS=Streptococcus pn... [more]
RPIA_STRPJ2.589e-2143.36Ribose-5-phosphate isomerase A OS=Streptococcus pn... [more]
RPIA_CHLSY2.589e-2140.71Ribose-5-phosphate isomerase A OS=Chloroflexus aur... [more]
RPIA_CHLAA2.589e-2140.71Ribose-5-phosphate isomerase A OS=Chloroflexus aur... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02C20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618148 ID=DN618148; Name=DN618148; organism=Citrus sinensis; type=EST; length=638bp
TTTTTCGAGCAACGGAACAATTTATTTATGTTTTATTCCACATCTGCCCA
ATTCAAGATACAAAATTTCTACTGAGAACCCGCATTGCCAAATCTAACAT
TTAAACTAAAATTAAGTCCAAAAAAAAATATCAGAGTAATGAACAACAAG
AAGAAGGACAAATTATAAAAAACCAAATTTTTTAAATCCTCACCGCCATC
ATCACTTGCTCTTAACTTCAACACCAGTCTTCCCAGCTATGATCACAGCA
GTCGCCATATCCAAAAACAACCCGTGTTCCACAACTCCTTCGAGCTTCCC
AATCTCCGTCCCAGCTGAAACCCCGTCTTTAATGGGCGTCTCGAAATACA
AATCGATAATGTAGTTAAAATTATCAGTGATATAAGGCTTCCCGTTTTCC
CCTTCTCTAAGCTTGGCCTCACAACCCAGTTCCCTGAACAAGTCTTGAAG
CCTAACCAAATTGTATTTCCAGCAAAACTGAACCACTTCAACTGGCATCG
CAAGCTTACTCCCACCGAGTCCGCTCACTAATTTACTCTCATCAGCCACA
ACAACGAAGCTTTTCGACGCAGCTTCCACCATCTTCTCTCTCAAAAGCGC
CCCGCCTCGGCCTTTAACGAGGTTCAATTCTGGGTCAA
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