DN618148

Overview
NameDN618148
Unique NameDN618148
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_ERWCT (Ribose-5-phosphate isomerase A OS=Erwinia carotovora subsp. atroseptica GN=rpiA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.860e-11
Identity = 49/142 (34.51%), Postives = 73/142 (51.41%), Query Frame = -3
Query:  205 LNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKT-GVEVKSK 627
            + ++KG G AL REK++ A S+ F+ + D SK V  LG  K  +PVEV+     Y    L     +LG + + R+G      +TDN N I+D++    I D V+    I  + GVV  GLF +    V + G   GV+  +K
Sbjct:   90 MQMIKGGGAALTREKIISALSRQFICIVDASKQVDVLG--KFPLPVEVIPMARSYVARELV----KLGGQPEYRQG-----VVTDNGNVILDVH-NLNIMDAVAVENHINGIAGVVTVGLFANRGADVALVGTADGVKTVTK 219          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_CAEEL (Probable-ribose 5-phosphate isomerase OS=Caenorhabditis elegans GN=rpia-1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.860e-11
Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = -3
Query:  223 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREG-ENGKPYITDNFNYIIDLYFETPI--KDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 636
            D +   +KG GG L +EK+V+ A+K+F V+AD  K    LG     +P+EV+    +     L+ + R  G   +LR+  +   P +TDN N+IID  FE  +  +D  +    +    G+VE GLF+    AV  A   G
Sbjct:  103 DGQFTCIKGGGGCLAQEKIVQTAAKNFYVIADYLKDSKHLGDRYPNVPIEVLPLAAQ---PLLRSIPRAEGGSCQLRQAVKKCGPIVTDNGNFIIDWQFEKNVSGRDWFAIQQRLANTPGIVETGLFIGCVDAVFFAYSDG 240          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_ACIF5 (Ribose-5-phosphate isomerase A OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rpiA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.860e-11
Identity = 51/147 (34.69%), Postives = 76/147 (51.70%), Query Frame = -3
Query:  205 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIID---LYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 636
            DP   L+KG GGAL REK+V +A++ FV +AD+SK    LG  K  +PVEV+ F   +   +L     ++G    LR G       TDN N I+D   L F  P++        I  + GV+++G+F      V++ G  G  ++ K
Sbjct:   87 DPHFRLIKGGGGALTREKIVASAARLFVCIADDSKDRPMLG--KFPLPVEVIPFARSFVARQLV----KIGGSPTLRSG-----ITTDNGNVILDVTGLDFSDPLR----MEETINAIPGVLDNGIFAHRRADVMLFGSAGGVIERK 218          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_ACIF2 (Ribose-5-phosphate isomerase A OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=rpiA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.860e-11
Identity = 51/147 (34.69%), Postives = 76/147 (51.70%), Query Frame = -3
Query:  205 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIID---LYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 636
            DP   L+KG GGAL REK+V +A++ FV +AD+SK    LG  K  +PVEV+ F   +   +L     ++G    LR G       TDN N I+D   L F  P++        I  + GV+++G+F      V++ G  G  ++ K
Sbjct:   87 DPHFRLIKGGGGALTREKIVASAARLFVCIADDSKDRPMLG--KFPLPVEVIPFARSFVARQLV----KIGGSPTLRSG-----ITTDNGNVILDVTGLDFSDPLR----MEETINAIPGVLDNGIFAHRRADVMLFGSAGGVIERK 218          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_XYLFA (Ribose-5-phosphate isomerase A OS=Xylella fastidiosa GN=rpiA PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.429e-11
Identity = 51/135 (37.78%), Postives = 73/135 (54.07%), Query Frame = -3
Query:  232 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG 636
            DP   L+KG G +L REK++  ASK F+ + D +K V+ LG  KL +P+EV+      +LV  Q + R  G +   REG      ITDN N I+D++    I D V    E+ ++ GVV  GLF      ++I G
Sbjct:   85 DPYKRLIKGGGASLTREKIIAEASKQFICIIDPNKQVATLG--KLPLPIEVIPMA--RSLVARQIMARTDG-QPVWREG-----VITDNGNVILDVH-HLRITDPVKLEQELNQIPGVVCVGLFARRCADLVIIG 208          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_NEIG2 (Ribose-5-phosphate isomerase A OS=Neisseria gonorrhoeae (strain NCCP11945) GN=rpiA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.429e-11
Identity = 53/132 (40.15%), Postives = 76/132 (57.58%), Query Frame = -3
Query:  232 LNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG 627
            L ++KG GGA L EK+V +AS+ FV +ADESK VS LG  K  +PVE V+     +LV  + L   +G + +LR G     Y T   N I+D++    I   ++   EI K+ GV+E+G+F   A  V+I G
Sbjct:   91 LQMIKGGGGAHLNEKIVASASEKFVCIADESKYVSRLG--KFPLPVEAVESA--RSLVSRKLL--AMGGQPELRIG-----YTTFYGNQIVDVH-GLNIDQPLTMEDEINKITGVLENGIFARDAADVLILG 210          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_NEIG1 (Ribose-5-phosphate isomerase A OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=rpiA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.429e-11
Identity = 53/132 (40.15%), Postives = 76/132 (57.58%), Query Frame = -3
Query:  232 LNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG 627
            L ++KG GGA L EK+V +AS+ FV +ADESK VS LG  K  +PVE V+     +LV  + L   +G + +LR G     Y T   N I+D++    I   ++   EI K+ GV+E+G+F   A  V+I G
Sbjct:   91 LQMIKGGGGAHLNEKIVASASEKFVCIADESKYVSRLG--KFPLPVEAVESA--RSLVSRKLL--AMGGQPELRIG-----YTTFYGNQIVDVH-GLNIDQPLTMEDEINKITGVLENGIFARDAADVLILG 210          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_HERAR (Ribose-5-phosphate isomerase A OS=Herminiimonas arsenicoxydans GN=rpiA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.429e-11
Identity = 49/130 (37.69%), Postives = 69/130 (53.08%), Query Frame = -3
Query:  232 LVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG 621
            ++KG G AL REK+V + +K FV +AD SKLV  LG     +PVEV+         +L      LG E +LR  ++GKP +TDN  +IID+     I+D      +I  + GVV  GLF      + + G
Sbjct:   92 MIKGGGAALTREKIVASVAKQFVCIADGSKLVDLLG--NFPLPVEVIPMAQAVVARKL----AALGGEPRLRL-KDGKPLVTDNGCFIIDV-LGLKIQDPAELEAQINNIVGVVTVGLFARRGADIALLG 213          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_AZOSE (Ribose-5-phosphate isomerase A OS=Azoarcus sp. (strain EbN1) GN=rpiA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.429e-11
Identity = 50/139 (35.97%), Postives = 77/139 (55.40%), Query Frame = -3
Query:  217 LVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKY---NLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDM-ATAVIIAGKTGVE 621
            ++KG GGAL REK+V A ++ F+ + D SK V+ LG  +  +PVE++     Y    LVR       +G   +LREG     ++TDN N I+D++    I    +  TE+ ++ GVV +GLF    A  +++A   GVE
Sbjct:   92 MIKGGGGALTREKIVAAVARRFICICDASKKVACLG--RFPLPVEIIPMARAYVERELVR-------IGGRPELREG-----FVTDNGNLIVDVH-GLMITSPRALETELNQIVGVVTNGLFARRGADVLLLATLAGVE 215          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_AZOSB (Ribose-5-phosphate isomerase A OS=Azoarcus sp. (strain BH72) GN=rpiA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.429e-11
Identity = 49/135 (36.30%), Postives = 72/135 (53.33%), Query Frame = -3
Query:  220 LVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDM-ATAVIIAGKTGV 621
            ++KG GGAL REK+V A ++ FV + DESK V  LG  +  +P+EV+         ++      LG   +LREG     ++TDN N IIDL+    I D  +    +  + GVV +GLF    A  +++A   GV
Sbjct:   92 MIKGGGGALTREKIVAAVARRFVCICDESKRVDVLG--RFPLPIEVIPMARS----QVMRAAAALGATPRLREG-----FVTDNGNLIIDLH-GLSITDPCATEQALNAVVGVVTNGLFAARGADTLLLASAQGV 214          
The following BLAST results are available for this feature:
BLAST of DN618148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 305
Match NameE-valueIdentityDescription
RPIA_ERWCT1.860e-1134.51Ribose-5-phosphate isomerase A OS=Erwinia carotovo... [more]
RPIA_CAEEL1.860e-1133.33Probable-ribose 5-phosphate isomerase OS=Caenorhab... [more]
RPIA_ACIF51.860e-1134.69Ribose-5-phosphate isomerase A OS=Acidithiobacillu... [more]
RPIA_ACIF21.860e-1134.69Ribose-5-phosphate isomerase A OS=Acidithiobacillu... [more]
RPIA_XYLFA2.429e-1137.78Ribose-5-phosphate isomerase A OS=Xylella fastidio... [more]
RPIA_NEIG22.429e-1140.15Ribose-5-phosphate isomerase A OS=Neisseria gonorr... [more]
RPIA_NEIG12.429e-1140.15Ribose-5-phosphate isomerase A OS=Neisseria gonorr... [more]
RPIA_HERAR2.429e-1137.69Ribose-5-phosphate isomerase A OS=Herminiimonas ar... [more]
RPIA_AZOSE2.429e-1135.97Ribose-5-phosphate isomerase A OS=Azoarcus sp. (st... [more]
RPIA_AZOSB2.429e-1136.30Ribose-5-phosphate isomerase A OS=Azoarcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02C20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618148 ID=DN618148; Name=DN618148; organism=Citrus sinensis; type=EST; length=638bp
TTTTTCGAGCAACGGAACAATTTATTTATGTTTTATTCCACATCTGCCCA
ATTCAAGATACAAAATTTCTACTGAGAACCCGCATTGCCAAATCTAACAT
TTAAACTAAAATTAAGTCCAAAAAAAAATATCAGAGTAATGAACAACAAG
AAGAAGGACAAATTATAAAAAACCAAATTTTTTAAATCCTCACCGCCATC
ATCACTTGCTCTTAACTTCAACACCAGTCTTCCCAGCTATGATCACAGCA
GTCGCCATATCCAAAAACAACCCGTGTTCCACAACTCCTTCGAGCTTCCC
AATCTCCGTCCCAGCTGAAACCCCGTCTTTAATGGGCGTCTCGAAATACA
AATCGATAATGTAGTTAAAATTATCAGTGATATAAGGCTTCCCGTTTTCC
CCTTCTCTAAGCTTGGCCTCACAACCCAGTTCCCTGAACAAGTCTTGAAG
CCTAACCAAATTGTATTTCCAGCAAAACTGAACCACTTCAACTGGCATCG
CAAGCTTACTCCCACCGAGTCCGCTCACTAATTTACTCTCATCAGCCACA
ACAACGAAGCTTTTCGACGCAGCTTCCACCATCTTCTCTCTCAAAAGCGC
CCCGCCTCGGCCTTTAACGAGGTTCAATTCTGGGTCAA
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