DN618148

Overview
NameDN618148
Unique NameDN618148
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_HAES2 (Ribose-5-phosphate isomerase A OS=Haemophilus somnus (strain 2336) GN=rpiA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11
Identity = 45/135 (33.33%), Postives = 70/135 (51.85%), Query Frame = -3
Query:  232 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG 636
            +P+  ++KG G AL REK+V A +K F+ + D SK V  L GS  A+P+EV+         +L      LG   + RE       +TDN N I+D+Y    I + +    E+  + GVV +G+F   +  ++I G
Sbjct:   87 NPQKMMIKGGGAALTREKIVAALAKKFICIVDSSKQVDVL-GSTFALPIEVIPMARSQVARKLV----ALGGSPEYREN-----VVTDNGNVILDVY-NFKIMNPIEMEKELNNVAGVVTNGIFALRSADIVIVG 210          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_HAES1 (Ribose-5-phosphate isomerase A OS=Haemophilus somnus (strain 129Pt) GN=rpiA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11
Identity = 45/135 (33.33%), Postives = 70/135 (51.85%), Query Frame = -3
Query:  232 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG 636
            +P+  ++KG G AL REK+V A +K F+ + D SK V  L GS  A+P+EV+         +L      LG   + RE       +TDN N I+D+Y    I + +    E+  + GVV +G+F   +  ++I G
Sbjct:   87 NPQKMMIKGGGAALTREKIVAALAKKFICIVDSSKQVDVL-GSTFALPIEVIPMARSQVARKLV----ALGGSPEYREN-----VVTDNGNVILDVY-NFKIMNPIEMEKELNNVAGVVTNGIFALRSADIVIVG 210          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_CUPTR (Ribose-5-phosphate isomerase A OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rpiA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11
Identity = 50/130 (38.46%), Postives = 68/130 (52.31%), Query Frame = -3
Query:  232 LVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG 621
            +VKG GGAL REK+V + ++ FV +AD SKLV  +G     +PVEVV         +LQ     LG + +LR  + G  Y TDN N I+D+     I D       I ++ GVV  GLF      V++ G
Sbjct:   96 MVKGGGGALTREKIVASVARRFVCIADGSKLVQTMGA--FPLPVEVVPMARAAVARKLQ----ALGGQPRLRMTKEGGIYKTDNGNVILDV-AGLKIDDPRGLEQTINQVPGVVTVGLFALRGADVLLLG 218          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_CHLAB (Ribose-5-phosphate isomerase A OS=Chlamydophila abortus GN=rpiA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11
Identity = 40/125 (32.00%), Postives = 69/125 (55.20%), Query Frame = -3
Query:  262 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFL 636
            DP+L ++KG GGA+ REK++  +S+  +++ADESK V  LG  K  +P+E+  F     +  L    + LG    LR+  +G  +IT+N NYI D++             ++ ++ G++E G  +
Sbjct:   93 DPQLRMIKGGGGAIFREKILLQSSRRRLILADESKHVQVLG--KFGLPIEISPFGRSSIIATL----KNLGYLGNLRKNSHGGFFITNNRNYIYDIHTPNVYPHPEEDLLKLLQIHGIIEVGFVI 211          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_BURXL (Ribose-5-phosphate isomerase A OS=Burkholderia xenovorans (strain LB400) GN=rpiA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11
Identity = 51/136 (37.50%), Postives = 68/136 (50.00%), Query Frame = -3
Query:  217 LVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG-KTGVE 621
            ++KG GGAL REK+V + S  FV +AD SKLV  LG     +P+EVV          +      LG    +R  + G P+ITDN N IID+     I D  +  T +    GVV  GLF      + + G  TGV+
Sbjct:   96 MIKGGGGALTREKIVASVSDVFVCIADASKLVETLG--SFPLPIEVVPMA----RTSIGRRVTALGGVPVVRVTKEGVPFITDNGNEIIDVK-GLRISDPRTLETHVNAWPGVVTVGLFASRGADLCLLGTDTGVD 224          
The following BLAST results are available for this feature:
BLAST of DN618148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 305
Match NameE-valueIdentityDescription
RPIA_HAES29.231e-1133.33Ribose-5-phosphate isomerase A OS=Haemophilus somn... [more]
RPIA_HAES19.231e-1133.33Ribose-5-phosphate isomerase A OS=Haemophilus somn... [more]
RPIA_CUPTR9.231e-1138.46Ribose-5-phosphate isomerase A OS=Cupriavidus taiw... [more]
RPIA_CHLAB9.231e-1132.00Ribose-5-phosphate isomerase A OS=Chlamydophila ab... [more]
RPIA_BURXL9.231e-1137.50Ribose-5-phosphate isomerase A OS=Burkholderia xen... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02C20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618148 ID=DN618148; Name=DN618148; organism=Citrus sinensis; type=EST; length=638bp
TTTTTCGAGCAACGGAACAATTTATTTATGTTTTATTCCACATCTGCCCA
ATTCAAGATACAAAATTTCTACTGAGAACCCGCATTGCCAAATCTAACAT
TTAAACTAAAATTAAGTCCAAAAAAAAATATCAGAGTAATGAACAACAAG
AAGAAGGACAAATTATAAAAAACCAAATTTTTTAAATCCTCACCGCCATC
ATCACTTGCTCTTAACTTCAACACCAGTCTTCCCAGCTATGATCACAGCA
GTCGCCATATCCAAAAACAACCCGTGTTCCACAACTCCTTCGAGCTTCCC
AATCTCCGTCCCAGCTGAAACCCCGTCTTTAATGGGCGTCTCGAAATACA
AATCGATAATGTAGTTAAAATTATCAGTGATATAAGGCTTCCCGTTTTCC
CCTTCTCTAAGCTTGGCCTCACAACCCAGTTCCCTGAACAAGTCTTGAAG
CCTAACCAAATTGTATTTCCAGCAAAACTGAACCACTTCAACTGGCATCG
CAAGCTTACTCCCACCGAGTCCGCTCACTAATTTACTCTCATCAGCCACA
ACAACGAAGCTTTTCGACGCAGCTTCCACCATCTTCTCTCTCAAAAGCGC
CCCGCCTCGGCCTTTAACGAGGTTCAATTCTGGGTCAA
back to top