DN618148

Overview
NameDN618148
Unique NameDN618148
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_STRGC (Ribose-5-phosphate isomerase A OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=rpiA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.840e-21
Identity = 62/141 (43.97%), Postives = 85/141 (60.28%), Query Frame = -3
Query:  214 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 636
            DP  N +KG GGALL EK+V   +KS++ V DESKLV  LG  KL  PVEVVQ    Y   ++   F   G +   R+ ++G+ ++TD  N+IIDL     I++ +    E+  + G+VEHGLF  M   VI+AGK GV+V
Sbjct:   88 DPNFNGIKGGGGALLMEKVVATPTKSYIWVVDESKLVEKLGAFKL--PVEVVQ----YGAEQVFRRFERAGYKPAFRQ-KDGQRFVTDMKNFIIDLDLGV-IENPIEFARELDHIVGIVEHGLFNQMVDKVIVAGKAGVQV 220          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_RHOPB (Ribose-5-phosphate isomerase A OS=Rhodopseudomonas palustris (strain BisB18) GN=rpiA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.840e-21
Identity = 56/140 (40.00%), Postives = 85/140 (60.71%), Query Frame = -3
Query:  214 LNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGC--EAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 627
            LNL+KG GGALLREK+V AAS   +V+ADESKLV+ LG  +  +P+EV  F     L  +++   E G      LR+G +G  ++TD  ++I+D      I D  S   ++  + GVVE+GLF+ +A+  ++AG  G+ +
Sbjct:   92 LNLIKGGGGALLREKIVAAASDRMIVIADESKLVANLG--RFPLPIEVNSFGLAATLRAIEEACAECGVFGPLSLRKGSDGHAFVTDGGHWIVDAQLGR-IPDAPSLADQLNAIPGVVENGLFIGLASMAVLAGPNGIRI 228          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA1_OCEIH (Ribose-5-phosphate isomerase A 1 OS=Oceanobacillus iheyensis GN=rpiA1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.840e-21
Identity = 58/142 (40.85%), Postives = 85/142 (59.86%), Query Frame = -3
Query:  211 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVK 636
            D   +L+KG G AL REK++  A+K FV++ D+SK+V  LG  + ++PVEV+ F W+    R  +   +LGC   +R  E  +P +TDN NYI+D  F+  I        EI  + GV+E GLF+DMAT VI+  K  + +K
Sbjct:   91 DANNHLIKGGGAALFREKIIAQAAKEFVIIVDQSKVVETLG--EFSLPVEVLPFSWQ----RTANEISKLGCVPTVRVHEE-EPLVTDNGNYILDCPFKV-IPHPDKLNKEIKSIVGVIETGLFIDMATTVIVGEKDNIYIK 224          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_RHIL3 (Ribose-5-phosphate isomerase A OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rpiA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.285e-20
Identity = 62/140 (44.29%), Postives = 85/140 (60.71%), Query Frame = -3
Query:  223 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGC--EAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 636
            D  L L+KG GGALLREK+V AAS+  +V+ADESKLV  LG    A+P+EV  F      + ++ +   LG   E  LR+  +G+ + TD  ++IID  F   I D  +  +E+  + GVVEHGLF++MA   IIAG  G
Sbjct:   89 DQALRLIKGGGGALLREKIVAAASERMIVIADESKLVETLGA--FALPIEVNPFGLVSTRIAIEKVAARLGLSGELDLRQSGDGE-FTTDGGHHIIDASFGR-IPDAEALSSELNSIPGVVEHGLFINMAALAIIAGPAG 224          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_PYRAB (Ribose-5-phosphate isomerase A OS=Pyrococcus abyssi GN=rpiA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.678e-20
Identity = 62/141 (43.97%), Postives = 85/141 (60.28%), Query Frame = -3
Query:  217 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGEN-GKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 636
            DP LNL+KGRG AL  EK++E+ +  F+V+ DE KLV  L   K+ +P+EV+   W+  +V    +F     EAKLR G N   P ITDN N+IID  F   I D +    E+  + GVVE+G+F D+A  VI+  K GV+
Sbjct:   91 DPNLNLIKGRGAALTMEKIIESRAGMFIVLVDERKLVDYL-CQKMPVPIEVIPQAWR-AIVEELSIF---NAEAKLRMGVNKDGPVITDNGNFIIDAKFPR-IDDPLDMEIELNTIPGVVENGIFADIADIVIVGTKEGVK 225          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_NITWN (Ribose-5-phosphate isomerase A OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rpiA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.863e-20
Identity = 55/143 (38.46%), Postives = 85/143 (59.44%), Query Frame = -3
Query:  214 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKL--REGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 636
            DP+LNL KG GGALLREK+V AAS   +V+ADE+K V+GLG  +  +P+EV+ F        + ++F + G   +L  R+  +G  ++TD  ++I D +    I D       +  + GVVEHGLF+ +A   ++AG  G+ +
Sbjct:   89 DPDLNLTKGGGGALLREKIVAAASDRMIVIADETKWVAGLG--RFPLPIEVIPFGLAATRRAITEVFAKAGVSGELAVRKRPDGHAFVTDGGHWIFDAHL-GQIPDASYLAGLLNPIPGVVEHGLFIGLARVAMLAGAEGIRI 228          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_AGRRK (Ribose-5-phosphate isomerase A OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=rpiA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.863e-20
Identity = 60/140 (42.86%), Postives = 85/140 (60.71%), Query Frame = -3
Query:  223 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEA--KLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 636
            D  L L+KG GGALLREK+V A+S+  +V+ADESK+V  LG    A+P+EV  F      ++++     LG      LR+ E+G  ++TD  ++IID  F   I D  +    +  + GVVEHGLF++MAT  IIAG +G
Sbjct:   89 DGALRLIKGGGGALLREKIVAASSQRMIVIADESKVVQTLGA--FALPIEVNPFGLVSTRIQIEKTAARLGLSGALNLRQSEDGN-FMTDGGHFIIDASFGR-IPDAEALSIALNSIPGVVEHGLFINMATLAIIAGPSG 224          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_BRUME (Ribose-5-phosphate isomerase A OS=Brucella melitensis GN=rpiA PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.739e-20
Identity = 58/145 (40.00%), Postives = 88/145 (60.69%), Query Frame = -3
Query:  205 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLR-EGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 636
            D EL+L+KG GGALLREK+V AAS S +V+AD+SK+V  LG  +  +P+EV +F     +  ++    + G    L    ++G P++TD  +YI+D  F   I D  +    +  + GVVEHGLF+++A A IIAG  G+   ++
Sbjct:   90 DGELSLIKGGGGALLREKIVAAASDSMIVIADQSKVVETLG--RFPLPIEVNRFGLGATIRAIEAAAVKCGLAGPLNLRLKDGSPFLTDGGHYIVDASFGR-IPDPKTLSDALFAIPGVVEHGLFIELARAAIIAGTDGIRTMNR 231          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_ROSCS (Ribose-5-phosphate isomerase A OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=rpiA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.883e-20
Identity = 62/139 (44.60%), Postives = 81/139 (58.27%), Query Frame = -3
Query:  220 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGV 636
            DP L L+KG GGA+LREK+V A++  FVV+A  SK V  L G +  +PVEVV F     + RL      LG E  LR   +G P++TD  N I+D +F   I D  +    I  + GVV HGLFL MA+  +IAG  G+
Sbjct:   91 DPHLRLIKGLGGAMLREKIVAASAARFVVMASVSKRVERL-GERSPLPVEVVTFGMPLCIRRL----AALGGEPVLRCDHSGAPFVTDEGNLILDCHFGV-IADPEALAAAICAIPGVVAHGLFLGMASLAVIAGPDGI 223          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_RHILO (Ribose-5-phosphate isomerase A OS=Rhizobium loti GN=rpiA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.883e-20
Identity = 56/141 (39.72%), Postives = 84/141 (59.57%), Query Frame = -3
Query:  217 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLR-EGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 636
            DPEL L+KG GGALLREK+V AAS+  +V+AD SK+V  LG  +  +P+EV QF  +   + +     +LG    +      G+ ++TD  ++I+D  F   I D  +    +  + GVVEHGLF+ +A+  IIAG  G++
Sbjct:   89 DPELTLIKGGGGALLREKIVAAASQRMIVIADRSKMVETLG--RFPLPIEVNQFGLRATEIAIAKTAADLGLSGPITLRMTGGQAFVTDGGHFILDASFGR-IPDTRALSNALHAIPGVVEHGLFIGLASTAIIAGGDGIQ 226          
The following BLAST results are available for this feature:
BLAST of DN618148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 305
Match NameE-valueIdentityDescription
RPIA_STRGC9.840e-2143.97Ribose-5-phosphate isomerase A OS=Streptococcus go... [more]
RPIA_RHOPB9.840e-2140.00Ribose-5-phosphate isomerase A OS=Rhodopseudomonas... [more]
RPIA1_OCEIH9.840e-2140.85Ribose-5-phosphate isomerase A 1 OS=Oceanobacillus... [more]
RPIA_RHIL31.285e-2044.29Ribose-5-phosphate isomerase A OS=Rhizobium legumi... [more]
RPIA_PYRAB1.678e-2043.97Ribose-5-phosphate isomerase A OS=Pyrococcus abyss... [more]
RPIA_NITWN2.863e-2038.46Ribose-5-phosphate isomerase A OS=Nitrobacter wino... [more]
RPIA_AGRRK2.863e-2042.86Ribose-5-phosphate isomerase A OS=Agrobacterium ra... [more]
RPIA_BRUME3.739e-2040.00Ribose-5-phosphate isomerase A OS=Brucella meliten... [more]
RPIA_ROSCS4.883e-2044.60Ribose-5-phosphate isomerase A OS=Roseiflexus cast... [more]
RPIA_RHILO4.883e-2039.72Ribose-5-phosphate isomerase A OS=Rhizobium loti G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02C20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618148 ID=DN618148; Name=DN618148; organism=Citrus sinensis; type=EST; length=638bp
TTTTTCGAGCAACGGAACAATTTATTTATGTTTTATTCCACATCTGCCCA
ATTCAAGATACAAAATTTCTACTGAGAACCCGCATTGCCAAATCTAACAT
TTAAACTAAAATTAAGTCCAAAAAAAAATATCAGAGTAATGAACAACAAG
AAGAAGGACAAATTATAAAAAACCAAATTTTTTAAATCCTCACCGCCATC
ATCACTTGCTCTTAACTTCAACACCAGTCTTCCCAGCTATGATCACAGCA
GTCGCCATATCCAAAAACAACCCGTGTTCCACAACTCCTTCGAGCTTCCC
AATCTCCGTCCCAGCTGAAACCCCGTCTTTAATGGGCGTCTCGAAATACA
AATCGATAATGTAGTTAAAATTATCAGTGATATAAGGCTTCCCGTTTTCC
CCTTCTCTAAGCTTGGCCTCACAACCCAGTTCCCTGAACAAGTCTTGAAG
CCTAACCAAATTGTATTTCCAGCAAAACTGAACCACTTCAACTGGCATCG
CAAGCTTACTCCCACCGAGTCCGCTCACTAATTTACTCTCATCAGCCACA
ACAACGAAGCTTTTCGACGCAGCTTCCACCATCTTCTCTCTCAAAAGCGC
CCCGCCTCGGCCTTTAACGAGGTTCAATTCTGGGTCAA
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