DN618148

Overview
NameDN618148
Unique NameDN618148
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_GLUOX (Ribose-5-phosphate isomerase A OS=Gluconobacter oxydans GN=rpiA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.378e-20
Identity = 61/140 (43.57%), Postives = 83/140 (59.29%), Query Frame = -3
Query:  217 LNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEA---KLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 627
            LNL+KG GGALLREK+V  A+K FVV+ D +K V  L G +  +PVEV+ F W+    RL        C A   K R    G  ++TD  N I+D +F  PI+       +I ++ GVVEHG+FL+MA+ V++A   GVE
Sbjct:   96 LNLIKGLGGALLREKIVAQAAKRFVVIVDGTKPVD-LLGERAPVPVEVISFGWECTAERL------AACGARGVKPRTDRAGSLFVTDTGNMILDCHF-GPIEKPEELAEKIDRIVGVVEHGMFLNMASEVLVATPDGVE 227          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_STRMU (Ribose-5-phosphate isomerase A OS=Streptococcus mutans GN=rpiA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.330e-20
Identity = 63/141 (44.68%), Postives = 82/141 (58.16%), Query Frame = -3
Query:  214 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 636
            DP  N +KG GGALL EK+V   +K ++ V DESK+V  LG  +L  PVEVVQ    Y   RL   F + G +   RE  +G  ++TD  N+IIDL   + I D ++ G  +    GVVEHGLF  M   VI+AGK GV +
Sbjct:   88 DPNFNGIKGGGGALLMEKIVGTLTKDYIWVVDESKMVDTLGAFRL--PVEVVQ----YGAERLFREFEKKGYKPSFRE-YDGVRFVTDMKNFIIDLDLGS-IPDPIAFGNMLDHQVGVVEHGLFNGMVNRVIVAGKDGVRI 220          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_BRUSU (Ribose-5-phosphate isomerase A OS=Brucella suis GN=rpiA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.330e-20
Identity = 58/145 (40.00%), Postives = 87/145 (60.00%), Query Frame = -3
Query:  205 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLR-EGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 636
            D EL+L+KG GGALLREK+V AAS S +V+AD+SK+V  LG  +  +P+EV +F     +  ++    + G    L    ++G P++TD  +YI+D  F   I D  +    +  + GVVEHGLF+ +A A IIAG  G+   ++
Sbjct:   90 DGELSLIKGGGGALLREKIVAAASDSMIVIADQSKVVETLG--RFPLPIEVNRFGLGATIRAIEAAAVKCGLAGPLNLRLKDGSPFLTDGGHYIVDASFGR-IPDPKTLSDALFAIPGVVEHGLFIGLARAAIIAGTDGIRTMNR 231          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_PYRFU (Ribose-5-phosphate isomerase A OS=Pyrococcus furiosus GN=rpiA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.421e-19
Identity = 58/141 (41.13%), Postives = 84/141 (59.57%), Query Frame = -3
Query:  217 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREG-ENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 636
            DP LNL+KGRG AL  EK++E  + +F+V+ DESKLV  L   K+ +P+EV+   WK  L  L         +A+LR G +   P +T+N N+IID  F   I D +    E+  + GVVE+G+F D+A  V++  K GV+
Sbjct:   91 DPNLNLIKGRGAALTMEKIIEYRAGTFIVLVDESKLVDYL-CQKMPVPIEVIPAAWKAILEELS----IFNAKAELRMGVKKDGPVVTENGNFIIDAKFPR-IDDPLDMEIELNTIPGVVENGIFADIADIVLVGTKEGVK 225          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_ROSS1 (Ribose-5-phosphate isomerase A OS=Roseiflexus sp. (strain RS-1) GN=rpiA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.856e-19
Identity = 61/139 (43.88%), Postives = 80/139 (57.55%), Query Frame = -3
Query:  220 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGV 636
            DP+L L+KG GGA+LREK+V A++  FVV+A  SK V  L G +  +PVEVV F       RL    + LG    LR   +G P++TD  N I+D  F   I D  +    I  + GVV HGLFL MA+  +IAG  G+
Sbjct:   91 DPQLRLIKGLGGAMLREKIVAASAARFVVMAAVSKCVERL-GERSPLPVEVVAFGLPLCARRL----KALGGAPALRRDRSGAPFVTDEGNLILDCNFGI-IADPEALAASICAIPGVVAHGLFLGMASLAVIAGPDGI 223          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_PARL1 (Ribose-5-phosphate isomerase A OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rpiA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.856e-19
Identity = 57/144 (39.58%), Postives = 84/144 (58.33%), Query Frame = -3
Query:  214 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKL--REGENGKPYITDNFNYIIDLYF-ETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 636
            D +L L+KG GGALLREK+V  AS   +V+AD SKLV  LG     +PVEV+ F       ++ ++    GC  K+  R  E G+P+ TD+ N+I D  F   P  DG+SA   + ++ GVV++GLF+ +A   I+    G ++
Sbjct:   89 DGKLRLIKGGGGALLREKIVATASDRMIVIADASKLVKTLG--SFPLPVEVIPFGSAVTARKIAEVASAHGCTGKMSRRADEYGEPFFTDSENFIYDCAFGSIPDPDGLSAA--LNRIPGVVDNGLFIGIAAMAIVGTDKGTDI 228          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_PYRHO (Ribose-5-phosphate isomerase A OS=Pyrococcus horikoshii GN=rpiA PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.424e-19
Identity = 58/141 (41.13%), Postives = 83/141 (58.87%), Query Frame = -3
Query:  217 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGEN-GKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 636
            DP LNL+KGRG AL  EK++E  + +F+V+ DE KLV  L   K+ +P+EV+   WK  +  L         +A+LR G N   P ITDN N+IID  F   I D +    E+  + GV+E+G+F D+A  VI+  + GV+
Sbjct:   91 DPNLNLIKGRGAALTMEKIIEYRAGTFIVLVDERKLVDYL-CQKMPVPIEVIPQAWKAIIEELS----IFNAKAELRMGVNKDGPVITDNGNFIIDAKFPR-IDDPLDMEIELNTIPGVIENGIFADIADIVIVGTREGVK 225          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_RHISN (Ribose-5-phosphate isomerase A OS=Rhizobium sp. (strain NGR234) GN=rpiA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.165e-19
Identity = 62/141 (43.97%), Postives = 87/141 (61.70%), Query Frame = -3
Query:  223 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGC--EAKLREGENGKPYITDNFNYIIDLYF-ETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 636
            D +L L+KG GGALLREK+V +AS+  +V+ADESK+V  LG  KL  P+EV QF      + ++ +   LG   +  LR   +G P++TD  + I+D  F   P  + ++AG  +  + GVVEHGLFL MA+  IIAG  G
Sbjct:   89 DGKLRLIKGGGGALLREKIVASASERMIVIADESKVVDVLGAFKL--PIEVNQFGLTTTRLAIEKVAARLGLTGDIGLRASGDG-PFMTDGGHLILDASFGRIPDAEALAAG--LNAIPGVVEHGLFLGMASLAIIAGPEG 224          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_OLICO (Ribose-5-phosphate isomerase A OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rpiA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.165e-19
Identity = 56/142 (39.44%), Postives = 82/142 (57.75%), Query Frame = -3
Query:  214 PELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGC--EAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 633
            P L+++KG GGALLREK+V AAS   VV++D+SK V  LG  +  +PVEV+ F        L   F E G   E  LR+G +G  ++TD  ++I+D +    I +       +  + GVVEHGLF+ +A   I+AG  G+ +
Sbjct:   90 PSLDVIKGGGGALLREKIVAAASTRMVVISDDSKWVETLG--RFPLPVEVIPFGLGATRRALATAFAEAGVTGEITLRQGPDGHAFVTDGGHWILDAHLGR-IPEPPRLAALLSAIPGVVEHGLFIGLAKTAILAGSQGIRI 228          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_CHLAD (Ribose-5-phosphate isomerase A OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rpiA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.165e-19
Identity = 57/139 (41.01%), Postives = 81/139 (58.27%), Query Frame = -3
Query:  220 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGV 636
            DP + L+KG GGALLREKMV  AS+   ++ DESKL   L G++ A+P+EVV F ++     L       G   +LR   +G+P+ TD  + I+D +   PI D       +    G+VEHGLF+ +AT + +AG TGV
Sbjct:   92 DPYMALIKGGGGALLREKMVAQASRRVAIIVDESKLSPAL-GTRFALPIEVVDFGYRATARWL----AAQGGSVRLRLRSDGQPFRTDQGHLILD-WACGPIADPTVLADRLAARAGIVEHGLFIGLATDLFVAGATGV 224          
The following BLAST results are available for this feature:
BLAST of DN618148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 305
Match NameE-valueIdentityDescription
RPIA_GLUOX6.378e-2043.57Ribose-5-phosphate isomerase A OS=Gluconobacter ox... [more]
RPIA_STRMU8.330e-2044.68Ribose-5-phosphate isomerase A OS=Streptococcus mu... [more]
RPIA_BRUSU8.330e-2040.00Ribose-5-phosphate isomerase A OS=Brucella suis GN... [more]
RPIA_PYRFU1.421e-1941.13Ribose-5-phosphate isomerase A OS=Pyrococcus furio... [more]
RPIA_ROSS11.856e-1943.88Ribose-5-phosphate isomerase A OS=Roseiflexus sp. ... [more]
RPIA_PARL11.856e-1939.58Ribose-5-phosphate isomerase A OS=Parvibaculum lav... [more]
RPIA_PYRHO2.424e-1941.13Ribose-5-phosphate isomerase A OS=Pyrococcus horik... [more]
RPIA_RHISN3.165e-1943.97Ribose-5-phosphate isomerase A OS=Rhizobium sp. (s... [more]
RPIA_OLICO3.165e-1939.44Ribose-5-phosphate isomerase A OS=Oligotropha carb... [more]
RPIA_CHLAD3.165e-1941.01Ribose-5-phosphate isomerase A OS=Chloroflexus agg... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02C20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618148 ID=DN618148; Name=DN618148; organism=Citrus sinensis; type=EST; length=638bp
TTTTTCGAGCAACGGAACAATTTATTTATGTTTTATTCCACATCTGCCCA
ATTCAAGATACAAAATTTCTACTGAGAACCCGCATTGCCAAATCTAACAT
TTAAACTAAAATTAAGTCCAAAAAAAAATATCAGAGTAATGAACAACAAG
AAGAAGGACAAATTATAAAAAACCAAATTTTTTAAATCCTCACCGCCATC
ATCACTTGCTCTTAACTTCAACACCAGTCTTCCCAGCTATGATCACAGCA
GTCGCCATATCCAAAAACAACCCGTGTTCCACAACTCCTTCGAGCTTCCC
AATCTCCGTCCCAGCTGAAACCCCGTCTTTAATGGGCGTCTCGAAATACA
AATCGATAATGTAGTTAAAATTATCAGTGATATAAGGCTTCCCGTTTTCC
CCTTCTCTAAGCTTGGCCTCACAACCCAGTTCCCTGAACAAGTCTTGAAG
CCTAACCAAATTGTATTTCCAGCAAAACTGAACCACTTCAACTGGCATCG
CAAGCTTACTCCCACCGAGTCCGCTCACTAATTTACTCTCATCAGCCACA
ACAACGAAGCTTTTCGACGCAGCTTCCACCATCTTCTCTCTCAAAAGCGC
CCCGCCTCGGCCTTTAACGAGGTTCAATTCTGGGTCAA
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