DN618148

Overview
NameDN618148
Unique NameDN618148
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_SINMW (Ribose-5-phosphate isomerase A OS=Sinorhizobium medicae (strain WSM419) GN=rpiA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.052e-18
Identity = 57/139 (41.01%), Postives = 82/139 (58.99%), Query Frame = -3
Query:  223 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGK-PYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 636
            D +L L+KG GGALLREK+V +AS   +V+ADE+K+V  LG  KL  P+EV  F      + ++ +   LG    +    +G  P++TD  + I+D  F   I D  +   E+  + GVVEHGLF++MA+  IIAG  G
Sbjct:   89 DGKLRLIKGGGGALLREKIVASASARMIVIADETKVVDVLGAFKL--PIEVNPFGQLATRLAIEKVASRLGLTGDIVVRASGDGPFMTDGGHLILDASFGR-IPDADALAVELNAIPGVVEHGLFIEMASMAIIAGPEG 224          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_PYRKO (Ribose-5-phosphate isomerase A OS=Pyrococcus kodakaraensis GN=rpiA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.052e-18
Identity = 52/141 (36.88%), Postives = 82/141 (58.16%), Query Frame = -3
Query:  217 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREG-ENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 636
            DP +NL+KGRG AL  EK++E  +  F+V+ DESKLV  L G K+ +P+EV+   W+     + +        A+LR   +   P +TDN N+I+D  F   I+D +    E+  + GVVE+G+F D+A  +++    GV+
Sbjct:   91 DPHMNLIKGRGAALTMEKIIEYRAGMFIVLVDESKLVEYL-GQKMPVPIEVIPAAWR----AIAEELEVFNATAELRMAVKKDGPVVTDNGNFILDAKF-ARIEDPLDLEIELNTIPGVVENGIFADIADIILVGTPEGVK 225          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_ARCFU (Ribose-5-phosphate isomerase A OS=Archaeoglobus fulgidus GN=rpiA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.052e-18
Identity = 58/140 (41.43%), Postives = 86/140 (61.43%), Query Frame = -3
Query:  226 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGK--PYITDNFNYIIDLYFETPIKDGVSA-GTEIGKLEGVVEHGLFLDMATAVIIAGKT 636
            D +LN +KG GGA+ REK+V  AS+  V++ DESKLV  L    + +PVEV+ F + + L  ++    ++GC+A+LREG+ GK  P ITDN N+++D  F    +D V     EI  + GVVE+G+F       +IAG +
Sbjct:   88 DAKLNCIKGGGGAMTREKIVAKASRKVVIIVDESKLVEKL---SMPVPVEVLPFAYGWVLREIE----KMGCKARLREGK-GKIGPVITDNGNFVVDCDFGVIEEDRVEGLEGEIKLISGVVENGIFSKELIDAVIAGSS 219          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_THET2 (Ribose-5-phosphate isomerase A OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rpiA PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.680e-18
Identity = 61/139 (43.88%), Postives = 84/139 (60.43%), Query Frame = -3
Query:  217 PELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 633
            P L L+KG GGALLREK+VE A+K F+V+AD +K V  LG  +  +PVE+V F ++  L  + D    LG E +LR  +  + Y TD  + I D  F  PI D +     + ++ GVVE GLF+ MAT  ++AG  GVE
Sbjct:   93 PGLALIKGMGGALLREKIVERAAKEFIVIADHTKKVPVLG--RGPVPVEIVPFGYRATLKAIAD----LGGEPELRM-DGDEFYFTDGGHLIADCRF-GPIGDPLGLHRALLEIPGVVETGLFVGMATRALVAGPFGVE 223          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_STRU0 (Ribose-5-phosphate isomerase A OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=rpiA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.680e-18
Identity = 64/141 (45.39%), Postives = 79/141 (56.03%), Query Frame = -3
Query:  214 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 636
            D E N +KG G ALL EK+V   +K ++ V DESK+V  LG  KL  PVEVVQ    Y   RL  +F + G     R  E+ K  ITD  N+IIDL  +  I+        + K  GVVEHGLF  M   VI+AGK GV+V
Sbjct:   88 DKEFNGIKGGGAALLMEKIVATPTKEYIWVVDESKMVEKLGAFKL--PVEVVQ----YGAERLFRVFEKAGYNPSFRMKEDQK-LITDMGNFIIDLDLKV-IEKPFEFAEMLDKTVGVVEHGLFNGMVHKVIVAGKDGVKV 220          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_STAES (Ribose-5-phosphate isomerase A OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rpiA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.571e-18
Identity = 58/144 (40.28%), Postives = 84/144 (58.33%), Query Frame = -3
Query:  205 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 636
            D  LNL+KG GGAL REK+++  +  FVVV DESKLV+ L G   A+PVEV +F W Y + +  +   ++    ++ E     P+ITDN NYI+D   +  I         +  L GV+E G FLD+A  VI+  + GV++ +K
Sbjct:   91 DSALNLIKGGGGALFREKVIDEMADRFVVVVDESKLVNYL-GETFALPVEVDKFNW-YQVAKKIERTYDIHVSRRVNE---DVPFITDNGNYILDCSLQNRI-PAYELHEFLIHLTGVLETGYFLDIADQVIVGTQEGVKILNK 228          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_STAEQ (Ribose-5-phosphate isomerase A OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rpiA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.571e-18
Identity = 58/144 (40.28%), Postives = 84/144 (58.33%), Query Frame = -3
Query:  205 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 636
            D  LNL+KG GGAL REK+++  +  FVVV DESKLV+ L G   A+PVEV +F W Y + +  +   ++    ++ E     P+ITDN NYI+D   +  I         +  L GV+E G FLD+A  VI+  + GV++ +K
Sbjct:   91 DSALNLIKGGGGALFREKVIDEMADRFVVVVDESKLVNYL-GETFALPVEVDKFNW-YQVAKKIERTYDIHVSRRVNE---DVPFITDNGNYILDCSLQNRI-PAYELHEFLIHLTGVLETGYFLDIADQVIVGTQEGVKILNK 228          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_PARUW (Ribose-5-phosphate isomerase A OS=Protochlamydia amoebophila (strain UWE25) GN=rpiA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.571e-18
Identity = 54/139 (38.85%), Postives = 81/139 (58.27%), Query Frame = -3
Query:  220 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGV 636
            DP   ++KG GGALLREK++ +ASK  +VV DE+KLV+ LG  K  +  E+  F +++ + +L+D     G    LR  ++   Y TDN NYI D+ F  PI + +     +    GV+E GLF ++A  VII  + G+
Sbjct:   95 DPLKQMIKGGGGALLREKLIASASKEMIVVIDETKLVNKLG--KFPVATEISIFTFRHIVKKLKD----HGYCGSLRVNQDQSLYRTDNGNYIFDICFPEPIDNPIFEHNRLKSFAGVLETGLFFNLAGRVIIGYQNGM 227          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_JANSC (Ribose-5-phosphate isomerase A OS=Jannaschia sp. (strain CCS1) GN=rpiA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.571e-18
Identity = 58/146 (39.73%), Postives = 81/146 (55.48%), Query Frame = -3
Query:  211 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRE---LGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG-VEVK 636
            DP LNL+KG GGALL EK+V  AS   VV+AD +K V  LG     +PVEV+ F W+     ++++      LG  A LR     +P+ TD  N I+DL+    I         + ++ GVVE+GLFLD+   ++I    G VEV+
Sbjct:   95 DPNLNLIKGGGGALLHEKVVATASDQMVVIADPTKQVDTLGA--FPLPVEVIPFGWQTTKALIEEMLSNLDVLGRSASLRL-SGAEPFRTDEGNLILDLHLRR-IAQPAQLSLVLNQIPGVVENGLFLDICDVLVIGNADGTVEVR 236          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_AGRVS (Ribose-5-phosphate isomerase A OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rpiA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.970e-18
Identity = 56/142 (39.44%), Postives = 80/142 (56.34%), Query Frame = -3
Query:  214 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKP-YITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 636
            D  L L+KG GGALLREK+V AAS   +V+ADE+KLV  LG   L  P+E+  F      + ++    +LG    +    +G   ++TD  +YI+D  F   I D V+    +  + GVVEHGLF+ MA+  ++AG  G  V
Sbjct:   89 DRHLTLIKGGGGALLREKIVAAASSRVIVIADETKLVETLGAYPL--PIEINGFGGIATRISIEKAAAKLGLSGTIGLRMSGDDLFMTDGGHYILDASFGR-IPDAVALSQALHAIPGVVEHGLFIGMASLAVVAGSDGARV 227          
The following BLAST results are available for this feature:
BLAST of DN618148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 305
Match NameE-valueIdentityDescription
RPIA_SINMW2.052e-1841.01Ribose-5-phosphate isomerase A OS=Sinorhizobium me... [more]
RPIA_PYRKO2.052e-1836.88Ribose-5-phosphate isomerase A OS=Pyrococcus kodak... [more]
RPIA_ARCFU2.052e-1841.43Ribose-5-phosphate isomerase A OS=Archaeoglobus fu... [more]
RPIA_THET22.680e-1843.88Ribose-5-phosphate isomerase A OS=Thermus thermoph... [more]
RPIA_STRU02.680e-1845.39Ribose-5-phosphate isomerase A OS=Streptococcus ub... [more]
RPIA_STAES4.571e-1840.28Ribose-5-phosphate isomerase A OS=Staphylococcus e... [more]
RPIA_STAEQ4.571e-1840.28Ribose-5-phosphate isomerase A OS=Staphylococcus e... [more]
RPIA_PARUW4.571e-1838.85Ribose-5-phosphate isomerase A OS=Protochlamydia a... [more]
RPIA_JANSC4.571e-1839.73Ribose-5-phosphate isomerase A OS=Jannaschia sp. (... [more]
RPIA_AGRVS5.970e-1839.44Ribose-5-phosphate isomerase A OS=Agrobacterium vi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02C20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618148 ID=DN618148; Name=DN618148; organism=Citrus sinensis; type=EST; length=638bp
TTTTTCGAGCAACGGAACAATTTATTTATGTTTTATTCCACATCTGCCCA
ATTCAAGATACAAAATTTCTACTGAGAACCCGCATTGCCAAATCTAACAT
TTAAACTAAAATTAAGTCCAAAAAAAAATATCAGAGTAATGAACAACAAG
AAGAAGGACAAATTATAAAAAACCAAATTTTTTAAATCCTCACCGCCATC
ATCACTTGCTCTTAACTTCAACACCAGTCTTCCCAGCTATGATCACAGCA
GTCGCCATATCCAAAAACAACCCGTGTTCCACAACTCCTTCGAGCTTCCC
AATCTCCGTCCCAGCTGAAACCCCGTCTTTAATGGGCGTCTCGAAATACA
AATCGATAATGTAGTTAAAATTATCAGTGATATAAGGCTTCCCGTTTTCC
CCTTCTCTAAGCTTGGCCTCACAACCCAGTTCCCTGAACAAGTCTTGAAG
CCTAACCAAATTGTATTTCCAGCAAAACTGAACCACTTCAACTGGCATCG
CAAGCTTACTCCCACCGAGTCCGCTCACTAATTTACTCTCATCAGCCACA
ACAACGAAGCTTTTCGACGCAGCTTCCACCATCTTCTCTCTCAAAAGCGC
CCCGCCTCGGCCTTTAACGAGGTTCAATTCTGGGTCAA
back to top