DN618148

Overview
NameDN618148
Unique NameDN618148
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_THET8 (Ribose-5-phosphate isomerase A OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rpiA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.797e-18
Identity = 60/139 (43.17%), Postives = 83/139 (59.71%), Query Frame = -3
Query:  217 PELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 633
            P L L+KG GGALLREK+VE  +K F+V+AD +K V  LG  +  +PVE+V F ++  L  + D    LG E +LR  +  + Y TD  + I D  F  PI D +     + ++ GVVE GLF+ MAT  ++AG  GVE
Sbjct:   93 PGLALIKGMGGALLREKIVERVAKEFIVIADHTKKVPVLG--RGPVPVEIVPFGYRATLKAIAD----LGGEPELRM-DGDEFYFTDGGHLIADCRF-GPIGDPLGLHRALLEIPGVVETGLFVGMATRALVAGPFGVE 223          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_STAHJ (Ribose-5-phosphate isomerase A OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rpiA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.797e-18
Identity = 56/144 (38.89%), Postives = 87/144 (60.42%), Query Frame = -3
Query:  205 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 636
            D  +NL+KG GGAL REK+++  +  FVV+ADESKLV+ LG S   +PVEV +F W +++ +  + F ++  E ++    +  P+ITDN NYI+D      I D       +  L GV+E G FL++   VI+  + GV++ +K
Sbjct:   91 DVNINLIKGGGGALFREKVIDEMAHRFVVLADESKLVNYLGES-FKLPVEVDKFNW-FHIAKKIEAFDDIITERRM---SDDVPFITDNGNYILDCQLNKQI-DPYQFHEYLIHLTGVLETGYFLNITDQVIVGTQDGVKIINK 228          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_RHIME (Ribose-5-phosphate isomerase A OS=Rhizobium meliloti GN=rpiA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.018e-17
Identity = 56/139 (40.29%), Postives = 81/139 (58.27%), Query Frame = -3
Query:  223 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGK-PYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 636
            D +L L+KG GGALLREK+V +AS   +V+ADESK+V  LG  KL  P+E+  F      + ++     LG   ++    +G   ++TD  + I+D  F   I D  +   E+  + GVVEHGLF+D+A+  IIAG  G
Sbjct:   89 DGKLRLIKGGGGALLREKIVASASTRMIVIADESKVVDVLGAFKL--PIEINPFGQVATRLAIEKTASRLGLAGEIVVRSSGDGVFMTDGGHLILDASFGR-IPDADALAVELNAIPGVVEHGLFIDVASMAIIAGPEG 224          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_LACLS (Ribose-5-phosphate isomerase A OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rpiA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.330e-17
Identity = 58/144 (40.28%), Postives = 79/144 (54.86%), Query Frame = -3
Query:  205 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 636
            D  LN +KG G ALL EK+V   SK ++ + DESKL   LG  K  +PVEV+    +Y   +L   F         R  E G+  ITD  ++IIDL+    I++      E+  + GVVEHGLF DM   VI+AG  GV++ S+
Sbjct:   88 DSHLNGIKGGGAALLMEKIVATYSKDYIWIVDESKLSENLGSFK--VPVEVI----RYGSEQLFKEFERAAYAPTWRLNEEGEKLITDMQHFIIDLHI-AKIENPQKLADELDLMVGVVEHGLFNDMVKKVIVAGSDGVKIISQ 224          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_DEIRA (Ribose-5-phosphate isomerase A OS=Deinococcus radiodurans GN=rpiA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.330e-17
Identity = 57/139 (41.01%), Postives = 77/139 (55.40%), Query Frame = -3
Query:  217 PELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 633
            P L+LVKG GGAL+REKM E  +K  +++AD +KLV+ L G K  +P+E+V F +   + RL    RE     +LR+    +PY+TDN NYI D        D       I    GVV+ GLFL MA    +A   GV+
Sbjct:   91 PNLDLVKGLGGALVREKMTEVQAKRLIIIADHTKLVTRL-GEKAPLPIEIVPFGFLSTIERL----REFLPGGRLRQ-PGAQPYVTDNGNYIFDAQLPAEF-DARELERRIKGTLGVVDTGLFLGMAERAFVAAPDGVQ 222          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_SILST (Ribose-5-phosphate isomerase A OS=Silicibacter sp. (strain TM1040) GN=rpiA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.737e-17
Identity = 56/146 (38.36%), Postives = 85/146 (58.22%), Query Frame = -3
Query:  211 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRE---LGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIA-GKTGVEVK 636
            D ELNL+KG GGALL+EK+V  AS   VV+AD++K V  LG     +P+EV+ F W+ +   +++       +G  + LR      PY+TD  N+I+DL+    I +       + ++ GVVE+GLF+D+   V+I  G   VEV+
Sbjct:   95 DSELNLIKGGGGALLQEKIVATASDQMVVIADKAKEVETLGA--FPLPIEVIPFGWQTSQALVEETLISMDVMGRSSTLRM-NGASPYVTDEGNHILDLHLNR-IGNPRQLALVLNQIPGVVENGLFIDICDTVVIGYGDGKVEVR 236          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_STRSY (Ribose-5-phosphate isomerase A OS=Streptococcus suis (strain 05ZYH33) GN=rpiA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.268e-17
Identity = 60/144 (41.67%), Postives = 78/144 (54.17%), Query Frame = -3
Query:  205 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 636
            D + N +KG G ALL EK+V   SK  + + DESK+V  LG  KL  PVEVVQ    Y    L  LF + G     R   NGK +ITD  N+IIDL     I+D  +   E+ +  GVVEHGLF+ + + VI+    G  +  K
Sbjct:   88 DGDFNGIKGGGAALLMEKVVAVNSKDCIWIVDESKMVQTLGAFKL--PVEVVQ----YGAENLFRLFEKKGYRPSFRM-RNGKKHITDMQNFIIDLDLRR-IEDTYALAEELDRTVGVVEHGLFIGLISKVIVGTPEGPNIIEK 223          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_STRS2 (Ribose-5-phosphate isomerase A OS=Streptococcus suis (strain 98HAH33) GN=rpiA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.268e-17
Identity = 60/144 (41.67%), Postives = 78/144 (54.17%), Query Frame = -3
Query:  205 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 636
            D + N +KG G ALL EK+V   SK  + + DESK+V  LG  KL  PVEVVQ    Y    L  LF + G     R   NGK +ITD  N+IIDL     I+D  +   E+ +  GVVEHGLF+ + + VI+    G  +  K
Sbjct:   88 DGDFNGIKGGGAALLMEKVVAVNSKDCIWIVDESKMVQTLGAFKL--PVEVVQ----YGAENLFRLFEKKGYRPSFRM-RNGKKHITDMQNFIIDLDLRR-IEDTYALAEELDRTVGVVEHGLFIGLISKVIVGTPEGPNIIEK 223          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_METRJ (Ribose-5-phosphate isomerase A OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=rpiA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.268e-17
Identity = 57/136 (41.91%), Postives = 77/136 (56.62%), Query Frame = -3
Query:  235 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGC--EAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIA 636
            D  L L+KG G ALLREK+V  AS+  VV+AD +K V+ LG     +PVEV  F  K     ++      GC  + +LR   +GKP +TD  +YI+D      I D  + G  +  + GVVEHGLFL +A A I+A
Sbjct:   89 DDRLRLIKGGGAALLREKIVACASRRMVVIADAAKHVARLGA--FPLPVEVNPFGLKATHRAVEAAVAGAGCSGDVRLRAQADGKPLVTDGGHYILDARLGA-IPDPEALGAALWAVPGVVEHGLFLGIADAAILA 221          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_LACGA (Ribose-5-phosphate isomerase A OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=rpiA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.268e-17
Identity = 61/139 (43.88%), Postives = 77/139 (55.40%), Query Frame = -3
Query:  223 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFE-TPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 636
            D  L+ +KG GGAL  EK V   SK  + + DESKLV  L G    +PVEV+    + N  R    F E G + + R  +NGK Y+T   NYIIDL  + TP+  G++    +    GVVEHGLFLDM   VIIA   G
Sbjct:   94 DDNLDGIKGGGGALTLEKNVAINSKKVIWIVDESKLVHHLSG--FPLPVEVLPVSAEQNFKR----FEEEGLKPQWRLDDNGKRYVTHYGNYIIDLAADPTPVPHGLA--DYLDHTVGVVEHGLFLDMCDEVIIAHSDG 224          
The following BLAST results are available for this feature:
BLAST of DN618148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 305
Match NameE-valueIdentityDescription
RPIA_THET87.797e-1843.17Ribose-5-phosphate isomerase A OS=Thermus thermoph... [more]
RPIA_STAHJ7.797e-1838.89Ribose-5-phosphate isomerase A OS=Staphylococcus h... [more]
RPIA_RHIME1.018e-1740.29Ribose-5-phosphate isomerase A OS=Rhizobium melilo... [more]
RPIA_LACLS1.330e-1740.28Ribose-5-phosphate isomerase A OS=Lactococcus lact... [more]
RPIA_DEIRA1.330e-1741.01Ribose-5-phosphate isomerase A OS=Deinococcus radi... [more]
RPIA_SILST1.737e-1738.36Ribose-5-phosphate isomerase A OS=Silicibacter sp.... [more]
RPIA_STRSY2.268e-1741.67Ribose-5-phosphate isomerase A OS=Streptococcus su... [more]
RPIA_STRS22.268e-1741.67Ribose-5-phosphate isomerase A OS=Streptococcus su... [more]
RPIA_METRJ2.268e-1741.91Ribose-5-phosphate isomerase A OS=Methylobacterium... [more]
RPIA_LACGA2.268e-1743.88Ribose-5-phosphate isomerase A OS=Lactobacillus ga... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02C20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618148 ID=DN618148; Name=DN618148; organism=Citrus sinensis; type=EST; length=638bp
TTTTTCGAGCAACGGAACAATTTATTTATGTTTTATTCCACATCTGCCCA
ATTCAAGATACAAAATTTCTACTGAGAACCCGCATTGCCAAATCTAACAT
TTAAACTAAAATTAAGTCCAAAAAAAAATATCAGAGTAATGAACAACAAG
AAGAAGGACAAATTATAAAAAACCAAATTTTTTAAATCCTCACCGCCATC
ATCACTTGCTCTTAACTTCAACACCAGTCTTCCCAGCTATGATCACAGCA
GTCGCCATATCCAAAAACAACCCGTGTTCCACAACTCCTTCGAGCTTCCC
AATCTCCGTCCCAGCTGAAACCCCGTCTTTAATGGGCGTCTCGAAATACA
AATCGATAATGTAGTTAAAATTATCAGTGATATAAGGCTTCCCGTTTTCC
CCTTCTCTAAGCTTGGCCTCACAACCCAGTTCCCTGAACAAGTCTTGAAG
CCTAACCAAATTGTATTTCCAGCAAAACTGAACCACTTCAACTGGCATCG
CAAGCTTACTCCCACCGAGTCCGCTCACTAATTTACTCTCATCAGCCACA
ACAACGAAGCTTTTCGACGCAGCTTCCACCATCTTCTCTCTCAAAAGCGC
CCCGCCTCGGCCTTTAACGAGGTTCAATTCTGGGTCAA
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