DN618148

Overview
NameDN618148
Unique NameDN618148
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA2_OCEIH (Ribose-5-phosphate isomerase A 2 OS=Oceanobacillus iheyensis GN=rpiA2 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.268e-17
Identity = 53/144 (36.81%), Postives = 83/144 (57.64%), Query Frame = -3
Query:  205 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 636
            D +L LVKG GG+L+REKM++  +++F+V+A   K +  LG     +PVEVV F W+    RLQ    + GC+  LR  E    +++DN NYIID  F+  I D  +    + ++ GV+E G+F++M    I+A    + +  K
Sbjct:   89 DDQLYLVKGGGGSLVREKMIDLVAETFIVIASGKKKIKKLG--SFPVPVEVVPFGWQATEQRLQ----QFGCQTNLRMVEE-DIFVSDNQNYIIDCDFK-EIDDAEALHRSLKQIVGVIETGIFINMVDKAIVADNGELSILEK 224          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_THICR (Ribose-5-phosphate isomerase A OS=Thiomicrospira crunogena (strain XCL-2) GN=rpiA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.963e-17
Identity = 58/141 (41.13%), Postives = 82/141 (58.16%), Query Frame = -3
Query:  217 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG-KTGVE 636
            DP+LNL+KG GGAL REK+V A +K FV +AD+SK V+ LG  K  +P+EV+     Y     +++ +  G E  LREG     + TDN N I+D++    I D V+  TE+  + GVV +GLF      + + G   GVE
Sbjct:   87 DPKLNLIKGGGGALTREKIVLAVAKQFVCIADDSKKVAVLG--KFPLPIEVIPMARSY---VAREVVKRFGGEPVLREG-----FTTDNGNVILDIH-GLEITDPVAMETELNGIVGVVTNGLFAARNADIFLCGTANGVE 216          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_SILPO (Ribose-5-phosphate isomerase A OS=Silicibacter pomeroyi GN=rpiA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.963e-17
Identity = 57/146 (39.04%), Postives = 84/146 (57.53%), Query Frame = -3
Query:  211 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRE---LGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIA-GKTGVEVK 636
            D +LNL+KG GGALL+EK+V  AS   VV+AD  K VS LG     +PVEV+ F W+     L++       LG  A LR      P++TD  N+I+DL+ +  I +       + ++ GVVE+GLF+D+   V++  G   VE++
Sbjct:   95 DGDLNLIKGGGGALLQEKIVATASDQMVVIADLGKEVSRLGA--FPLPVEVIPFGWQTTQALLEETLISMDVLGRTATLRM-NGDTPFVTDEGNHILDLHLQR-IGNARQLALVLNQIPGVVENGLFIDICDTVVVGHGDGRVEIR 236          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_LISMF (Ribose-5-phosphate isomerase A OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rpiA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.963e-17
Identity = 51/138 (36.96%), Postives = 78/138 (56.52%), Query Frame = -3
Query:  223 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 636
            D +   +KG GGALLREKMV +AS   + V  E KLV  LG  K  +P+EV+ F WK    +++    +   +  LR   +G+ Y+T+N NYI+D+  +T  +D      ++ ++ G+VEHGLFL     ++ A   G
Sbjct:   87 DTDFQGIKGGGGALLREKMVASASLKNIWVVSEEKLVRNLG--KFPLPIEVIPFGWK----QIERTLEKEHIQTILRRQSSGEIYVTNNGNYILDIVNQT-FRDAEMWQEKLAQIPGIVEHGLFLHYVDIIVCAKANG 217          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_LISMC (Ribose-5-phosphate isomerase A OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rpiA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.963e-17
Identity = 51/138 (36.96%), Postives = 78/138 (56.52%), Query Frame = -3
Query:  223 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 636
            D +   +KG GGALLREKMV +AS   + V  E KLV  LG  K  +P+EV+ F WK    +++    +   +  LR   +G+ Y+T+N NYI+D+  +T  +D      ++ ++ G+VEHGLFL     ++ A   G
Sbjct:   87 DTDFQGIKGGGGALLREKMVASASLKNIWVVSEEKLVRNLG--KFPLPIEVIPFGWK----QIERTLEKEHVQTILRRQSSGEIYVTNNGNYILDIVNQT-FRDAEMWQEKLAQIPGIVEHGLFLHYVDIIVCAKANG 217          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_LACLA (Ribose-5-phosphate isomerase A OS=Lactococcus lactis subsp. lactis GN=rpiA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.963e-17
Identity = 57/144 (39.58%), Postives = 78/144 (54.17%), Query Frame = -3
Query:  205 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 636
            D  LN +KG G ALL EK+V   SK ++ + DESKL   LG  K+  PVEV+     Y   ++   F   G     R  E  +  ITD  ++IIDL+  + IK+      E+  + GVVEHGLF +M   VI+AG  GV + +K
Sbjct:   88 DSSLNGIKGGGAALLMEKIVATYSKDYIWIVDESKLSENLGSFKI--PVEVI----PYGSQQVFKKFEAAGYAPTWRLNEENERLITDMHHFIIDLHI-SQIKEPEKLAEELDLMGGVVEHGLFNNMVKKVIVAGNEGVRIINK 224          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_AGRT5 (Ribose-5-phosphate isomerase A OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rpiA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.963e-17
Identity = 55/142 (38.73%), Postives = 80/142 (56.34%), Query Frame = -3
Query:  214 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGK-PYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 636
            D  L LVKG GGALLREK+V AAS   +V+AD+SK+V  LG     +P+E+  F      + ++ L    G   +L    +G   ++TD  + I+D  F   I D  +   E+  + GVVEHGLF+++A+  IIAG  G  +
Sbjct:   89 DHVLRLVKGGGGALLREKIVAAASGRMIVIADQSKVVETLGA--FPLPIEINPFGQVATRIAIEKLAARSGLSGELTMRSSGDGAFMTDGGHLILDASFGR-IPDAEALARELNTIPGVVEHGLFINLASLAIIAGPEGARM 227          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_LISMO (Ribose-5-phosphate isomerase A OS=Listeria monocytogenes GN=rpiA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.869e-17
Identity = 52/138 (37.68%), Postives = 78/138 (56.52%), Query Frame = -3
Query:  223 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 636
            D +   +KG GGALLREKMV +AS   + V  E KLV  LG  K  +P+EV+ F WK    +++    +   +  LR+  +G+ Y+T+N NYI+D+  +T   D      ++ ++ G+VEHGLFL     +I A   G
Sbjct:   87 DTDFQGIKGGGGALLREKMVASASLKNIWVVSEEKLVRNLG--KFPLPLEVIPFGWK----QVERKLEKEHIQTNLRKQSSGEVYVTNNGNYILDIVNQT-FTDAEMWQEKLAQIPGIVEHGLFLHYVDIIICAKANG 217          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_STRPZ (Ribose-5-phosphate isomerase A OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=rpiA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.054e-17
Identity = 62/141 (43.97%), Postives = 78/141 (55.32%), Query Frame = -3
Query:  214 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 636
            D + N +KG G ALL EK+V   +K ++ V D SK+V  LG  KL  PVEVVQ    Y   RL  +F + G +   R   + +  +TD  NYIIDL     IKD V+ G  +    GVVEHGLF  M   VI+A K GV V
Sbjct:   88 DKDFNGIKGGGAALLMEKIVATPTKEYIWVVDASKMVEHLGAFKL--PVEVVQ----YGADRLFRVFEKAGYKPSFRMKGDSR-LVTDMQNYIIDLDLGC-IKDPVAFGHLLDGTVGVVEHGLFNGMVDKVIVASKDGVTV 220          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_STRPM (Ribose-5-phosphate isomerase A OS=Streptococcus pyogenes serotype M28 GN=rpiA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.054e-17
Identity = 62/141 (43.97%), Postives = 78/141 (55.32%), Query Frame = -3
Query:  214 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 636
            D + N +KG G ALL EK+V   +K ++ V D SK+V  LG  KL  PVEVVQ    Y   RL  +F + G +   R   + +  +TD  NYIIDL     IKD V+ G  +    GVVEHGLF  M   VI+A K GV V
Sbjct:   88 DKDFNGIKGGGAALLMEKIVATPTKEYIWVVDASKMVEHLGAFKL--PVEVVQ----YGADRLFRVFEKAGYKPSFRMKGDSR-LVTDMQNYIIDLDLGC-IKDPVAFGHLLDGTVGVVEHGLFNGMVDKVIVASKDGVTV 220          
The following BLAST results are available for this feature:
BLAST of DN618148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 305
Match NameE-valueIdentityDescription
RPIA2_OCEIH2.268e-1736.81Ribose-5-phosphate isomerase A 2 OS=Oceanobacillus... [more]
RPIA_THICR2.963e-1741.13Ribose-5-phosphate isomerase A OS=Thiomicrospira c... [more]
RPIA_SILPO2.963e-1739.04Ribose-5-phosphate isomerase A OS=Silicibacter pom... [more]
RPIA_LISMF2.963e-1736.96Ribose-5-phosphate isomerase A OS=Listeria monocyt... [more]
RPIA_LISMC2.963e-1736.96Ribose-5-phosphate isomerase A OS=Listeria monocyt... [more]
RPIA_LACLA2.963e-1739.58Ribose-5-phosphate isomerase A OS=Lactococcus lact... [more]
RPIA_AGRT52.963e-1738.73Ribose-5-phosphate isomerase A OS=Agrobacterium tu... [more]
RPIA_LISMO3.869e-1737.68Ribose-5-phosphate isomerase A OS=Listeria monocyt... [more]
RPIA_STRPZ5.054e-1743.97Ribose-5-phosphate isomerase A OS=Streptococcus py... [more]
RPIA_STRPM5.054e-1743.97Ribose-5-phosphate isomerase A OS=Streptococcus py... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02C20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618148 ID=DN618148; Name=DN618148; organism=Citrus sinensis; type=EST; length=638bp
TTTTTCGAGCAACGGAACAATTTATTTATGTTTTATTCCACATCTGCCCA
ATTCAAGATACAAAATTTCTACTGAGAACCCGCATTGCCAAATCTAACAT
TTAAACTAAAATTAAGTCCAAAAAAAAATATCAGAGTAATGAACAACAAG
AAGAAGGACAAATTATAAAAAACCAAATTTTTTAAATCCTCACCGCCATC
ATCACTTGCTCTTAACTTCAACACCAGTCTTCCCAGCTATGATCACAGCA
GTCGCCATATCCAAAAACAACCCGTGTTCCACAACTCCTTCGAGCTTCCC
AATCTCCGTCCCAGCTGAAACCCCGTCTTTAATGGGCGTCTCGAAATACA
AATCGATAATGTAGTTAAAATTATCAGTGATATAAGGCTTCCCGTTTTCC
CCTTCTCTAAGCTTGGCCTCACAACCCAGTTCCCTGAACAAGTCTTGAAG
CCTAACCAAATTGTATTTCCAGCAAAACTGAACCACTTCAACTGGCATCG
CAAGCTTACTCCCACCGAGTCCGCTCACTAATTTACTCTCATCAGCCACA
ACAACGAAGCTTTTCGACGCAGCTTCCACCATCTTCTCTCTCAAAAGCGC
CCCGCCTCGGCCTTTAACGAGGTTCAATTCTGGGTCAA
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