DN618145

Overview
NameDN618145
Unique NameDN618145
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length552
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN618145 vs. ExPASy Swiss-Prot
Match: UBIQ_ASPOF (Ubiquitin OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.489e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 2 
Query:  398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 550
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of DN618145 vs. ExPASy Swiss-Prot
Match: UBIQ_ARATH (Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.489e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 2 
Query:  398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 550
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of DN618145 vs. ExPASy Swiss-Prot
Match: UBIQ_YEAST (Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.546e-21
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 2 
Query:  398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 550
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of DN618145 vs. ExPASy Swiss-Prot
Match: UBIQ_SCHPO (Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.546e-21
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 2 
Query:  398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 550
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of DN618145 vs. ExPASy Swiss-Prot
Match: UBIQ_KLULA (Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 5.546e-21
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 2 
Query:  398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 550
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of DN618145 vs. ExPASy Swiss-Prot
Match: UBIQ_CRYNE (Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.546e-21
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 2 
Query:  398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 550
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of DN618145 vs. ExPASy Swiss-Prot
Match: UBIQ_CANAL (Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.546e-21
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 2 
Query:  398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 550
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of DN618145 vs. ExPASy Swiss-Prot
Match: UBIQ_CHLRE (Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.243e-21
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 2 
Query:  398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 550
            MQIFVKTLTGKTITLEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of DN618145 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.460e-21
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 2 
Query:  398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 550
            MQIFVKTLTGKTITLEVESSDTIDNVK KIQDKEGIPPDQQRLIFAGKQLE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of DN618145 vs. ExPASy Swiss-Prot
Match: UBL1_ORYSJ (Ubiquitin-like protein 1 OS=Oryza sativa subsp. japonica GN=UBL1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.614e-20
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 2 
Query:  398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 550
            MQIFVKTLTGKTITLEVESSDTI NVKAK+QDKEGIPPDQQRLIFAGKQLE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIQNVKAKVQDKEGIPPDQQRLIFAGKQLE 51
The following BLAST results are available for this feature:
BLAST of DN618145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
UBIQ_ASPOF2.489e-21100.00Ubiquitin OS=Asparagus officinalis PE=3 SV=1[more]
UBIQ_ARATH2.489e-21100.00Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=... [more]
UBIQ_YEAST5.546e-2198.04Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1... [more]
UBIQ_SCHPO5.546e-2198.04Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=... [more]
UBIQ_KLULA5.546e-2198.04Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=... [more]
UBIQ_CRYNE5.546e-2198.04Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 ... [more]
UBIQ_CANAL5.546e-2198.04Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1[more]
UBIQ_CHLRE7.243e-2198.04Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=... [more]
UBIQ_NEUCR9.460e-2198.04Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1[more]
UBL1_ORYSJ1.614e-2096.08Ubiquitin-like protein 1 OS=Oryza sativa subsp. ja... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02C18_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618145 ID=DN618145; Name=DN618145; organism=Citrus sinensis; type=EST; length=552bp
ACAAGCACTTCCAAATAGAAAATGATACAATTTGTACAGTATCCAACTAC
ATCAATTCTAATTTCCAATTTTGCTCATTCAACGTGCATATTGATTTATG
ACACCAAAAGGGCTGCCTATGTGTACATAATTGATCAGAGTATTTAGTGT
TTTACACATAGGAGCCACACTGAACCTTCTGAGACTCTAGCACAATTCTT
GCAGCTTCTACAACTACTTGTCCGCTTACATAGTGCTGCCGGCACACAGG
CATGTAGATATCAGACCCACCAATCAATTCCGTCTTTGTCTCCTCAGTCT
TCCTTAAAGTGAAGAAAGACCAATAAAAAAAAAAAGAAAAAGAAACAAAA
AACATACTTAGTTTAGATACCAAGGCTCCCAATCTCAGCCTTCCAACATG
CAGATCTTTGTGAAAACTTTGACCGGCAAGACCATCACTCTCGAGGTGGA
GAGCTCCGACACGATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAAG
GGATTCCACCGGACCAGCAGCGGCTGATCTTCGCCGGAAAGCAGCTCGAG
GA
back to top