DN618145

Overview
NameDN618145
Unique NameDN618145
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length552
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN618145 vs. ExPASy Swiss-Prot
Match: UBIQ_BOVIN (Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.752e-20
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 2 
Query:  398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 550
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of DN618145 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.752e-20
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 2 
Query:  398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 550
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of DN618145 vs. ExPASy Swiss-Prot
Match: UBIQ_TETPY (Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.595e-20
Identity = 48/51 (94.12%), Postives = 51/51 (100.00%), Query Frame = 2 
Query:  398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 550
            MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct:    1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of DN618145 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.695e-20
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 2 
Query:  398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 550
            MQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLE
Sbjct:    1 MQIFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of DN618145 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.132e-20
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 2 
Query:  398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 550
            MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct:    1 MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of DN618145 vs. ExPASy Swiss-Prot
Match: UBIQ_EIMBO (Ubiquitin OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.132e-20
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 2 
Query:  398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 550
            MQIFVKTLTGKTITL+VE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of DN618145 vs. ExPASy Swiss-Prot
Match: UBIQ_STRPU (Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.008e-20
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 2 
Query:  398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 550
            MQIFVKTLTGKTITLEVE SD+I+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of DN618145 vs. ExPASy Swiss-Prot
Match: UBIQ_ENCCU (Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_0740i PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.008e-20
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 2 
Query:  398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 550
            MQIFVKTLTGKTITLEVE SD+I+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of DN618145 vs. ExPASy Swiss-Prot
Match: UBIQ_DICDI (Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.008e-20
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 2 
Query:  398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 550
            MQIFVKTLTGKTITLEVE SD I+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct:    1 MQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of DN618145 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.046e-19
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 2 
Query:  398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 550
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 51
The following BLAST results are available for this feature:
BLAST of DN618145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
UBIQ_BOVIN2.752e-2096.08Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1[more]
UBIQ_ACACA2.752e-2096.08Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1[more]
UBIQ_TETPY3.595e-2094.12Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 ... [more]
UBIQ_EUPEU4.695e-2094.12Ubiquitin OS=Euplotes eurystomus PE=3 SV=1[more]
UBIQ_TRYBB6.132e-2094.12Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1[more]
UBIQ_EIMBO6.132e-2094.12Ubiquitin OS=Eimeria bovis PE=2 SV=1[more]
UBIQ_STRPU8.008e-2094.12Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV... [more]
UBIQ_ENCCU8.008e-2094.12Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_074... [more]
UBIQ_DICDI8.008e-2094.12Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1... [more]
UBIQ_LEIMA1.046e-1994.12Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02C18_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618145 ID=DN618145; Name=DN618145; organism=Citrus sinensis; type=EST; length=552bp
ACAAGCACTTCCAAATAGAAAATGATACAATTTGTACAGTATCCAACTAC
ATCAATTCTAATTTCCAATTTTGCTCATTCAACGTGCATATTGATTTATG
ACACCAAAAGGGCTGCCTATGTGTACATAATTGATCAGAGTATTTAGTGT
TTTACACATAGGAGCCACACTGAACCTTCTGAGACTCTAGCACAATTCTT
GCAGCTTCTACAACTACTTGTCCGCTTACATAGTGCTGCCGGCACACAGG
CATGTAGATATCAGACCCACCAATCAATTCCGTCTTTGTCTCCTCAGTCT
TCCTTAAAGTGAAGAAAGACCAATAAAAAAAAAAAGAAAAAGAAACAAAA
AACATACTTAGTTTAGATACCAAGGCTCCCAATCTCAGCCTTCCAACATG
CAGATCTTTGTGAAAACTTTGACCGGCAAGACCATCACTCTCGAGGTGGA
GAGCTCCGACACGATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAAG
GGATTCCACCGGACCAGCAGCGGCTGATCTTCGCCGGAAAGCAGCTCGAG
GA
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