DN618145

Overview
NameDN618145
Unique NameDN618145
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length552
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN618145 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.788e-11
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = 2 
Query:  398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 547
            M I VKTLTGK I L++E +D ++ +K K+++KEGIPP QQRLIFAGKQ+
Sbjct:    1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQM 50
[Close]
BLAST of DN618145 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.984e-11
Identity = 29/50 (58.00%), Postives = 41/50 (82.00%), Query Frame = 2 
Query:  398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 547
            M I VKTLTGK I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQM 50
The following BLAST results are available for this feature:
BLAST of DN618145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
NEDD8_CAEEL1.788e-1162.00NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1[more]
NEDD8_DROME3.984e-1158.00NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02C18_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618145 ID=DN618145; Name=DN618145; organism=Citrus sinensis; type=EST; length=552bp
ACAAGCACTTCCAAATAGAAAATGATACAATTTGTACAGTATCCAACTAC
ATCAATTCTAATTTCCAATTTTGCTCATTCAACGTGCATATTGATTTATG
ACACCAAAAGGGCTGCCTATGTGTACATAATTGATCAGAGTATTTAGTGT
TTTACACATAGGAGCCACACTGAACCTTCTGAGACTCTAGCACAATTCTT
GCAGCTTCTACAACTACTTGTCCGCTTACATAGTGCTGCCGGCACACAGG
CATGTAGATATCAGACCCACCAATCAATTCCGTCTTTGTCTCCTCAGTCT
TCCTTAAAGTGAAGAAAGACCAATAAAAAAAAAAAGAAAAAGAAACAAAA
AACATACTTAGTTTAGATACCAAGGCTCCCAATCTCAGCCTTCCAACATG
CAGATCTTTGTGAAAACTTTGACCGGCAAGACCATCACTCTCGAGGTGGA
GAGCTCCGACACGATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAAG
GGATTCCACCGGACCAGCAGCGGCTGATCTTCGCCGGAAAGCAGCTCGAG
GA
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