DN618140

Overview
NameDN618140
Unique NameDN618140
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618140 vs. ExPASy Swiss-Prot
Match: PHSG_SYNY3 (Glycogen phosphorylase OS=Synechocystis sp. (strain PCC 6803) GN=glgP PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.335e-15
Identity = 43/89 (48.31%), Postives = 59/89 (66.29%), Query Frame = -3
Query:  245 IRSGAFGSYD---YNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNI 502
            I SG F   D   + PL+DSL G       D +LV  DF +Y++ Q++V +AYKDQ+ W +M+IL+ A  GKFSSDRTI +YA++IW I
Sbjct:  744 INSGFFSHGDTALFRPLMDSLLGQ------DPYLVFADFQAYVDCQNQVGEAYKDQENWARMAILNVARMGKFSSDRTIREYAEDIWAI 826          
BLAST of DN618140 vs. ExPASy Swiss-Prot
Match: PHSG_SHIFL (Glycogen phosphorylase OS=Shigella flexneri GN=glgP PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.241e-13
Identity = 45/123 (36.59%), Postives = 69/123 (56.10%), Query Frame = -3
Query:  233 AEQVPKLRKE--REDGLFKPDPRFEEAKQFIRSGAFGSYD---YNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNITECR 586
            AE+V +LR++  +    ++ D    +    I SG F   D   Y  L+DSL        GD++ V  D+ SY++ QD+VD+ Y+ Q++W   ++L+ A  G FSSDRTI +YA  IW+I   R
Sbjct:  697 AEEVEELRRQGYKPREYYEKDEELHQVLTQIGSGVFSPEDPGRYRDLVDSL-----INFGDHYQVLADYRSYVDCQDKVDELYELQEEWTAKAMLNIANMGYFSSDRTIKEYADHIWHIDPVR 814          
BLAST of DN618140 vs. ExPASy Swiss-Prot
Match: PHSG_ECOLI (Glycogen phosphorylase OS=Escherichia coli (strain K12) GN=glgP PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.241e-13
Identity = 45/123 (36.59%), Postives = 69/123 (56.10%), Query Frame = -3
Query:  233 AEQVPKLRKE--REDGLFKPDPRFEEAKQFIRSGAFGSYD---YNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNITECR 586
            AE+V +LR++  +    ++ D    +    I SG F   D   Y  L+DSL        GD++ V  D+ SY++ QD+VD+ Y+ Q++W   ++L+ A  G FSSDRTI +YA  IW+I   R
Sbjct:  697 AEEVEELRRQGYKPREYYEKDEELHQVLTQIGSGVFSPEDPGRYRDLVDSL-----INFGDHYQVLADYRSYVDCQDKVDELYELQEEWTAKAMLNIANMGYFSSDRTIKEYADHIWHIDPVR 814          
BLAST of DN618140 vs. ExPASy Swiss-Prot
Match: PYG_DROME (Glycogen phosphorylase OS=Drosophila melanogaster GN=GlyP PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.927e-13
Identity = 41/115 (35.65%), Postives = 69/115 (60.00%), Query Frame = -3
Query:  245 EQVPKLRKEREDGL--FKPDPRFEEAKQFIRSGAFGSYDYNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNI 583
            ++V  L+K+  +    +  +P  ++    I+ G F   + N   +  +    Y   D++ +  D+ +Y++AQD V + Y++Q KWL+MSI + A SGKFSSDRTIA+YA+EIW +
Sbjct:  717 DEVEALKKKGYNAYDYYNANPEVKQVIDQIQGGFFSPGNPNEFKNIADILLKY---DHYYLLADYDAYIKAQDLVSKTYQNQAKWLEMSINNIASSGKFSSDRTIAEYAREIWGV 828          
BLAST of DN618140 vs. ExPASy Swiss-Prot
Match: PHSG_YEAST (Glycogen phosphorylase OS=Saccharomyces cerevisiae GN=GPH1 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 4.993e-13
Identity = 44/119 (36.97%), Postives = 66/119 (55.46%), Query Frame = -3
Query:  245 VAEQVPKLRKEREDGLFKPDPRFEEAKQFIRSGAFGSY---DYNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQK-KWLKMSILSTAGSGKFSSDRTIAQYAKEIWNI 589
            ++E V +LR   +          +    +I SG F      ++ PL+DS++ +     GDY+LV  DF SYL   + VDQ + +Q+ +WLK S+LS A  G FSSDR I +Y+  IWN+
Sbjct:  785 LSENVEELRYNHQYHPQDLPSSLDSVLSYIESGQFSPENPNEFKPLVDSIKYH-----GDYYLVSDDFESYLATHELVDQEFHNQRSEWLKKSVLSLANVGFFSSDRCIEEYSDTIWNV 898          
BLAST of DN618140 vs. ExPASy Swiss-Prot
Match: PHSG_CHLTR (Glycogen phosphorylase OS=Chlamydia trachomatis GN=glgP PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.112e-12
Identity = 41/118 (34.75%), Postives = 62/118 (52.54%), Query Frame = -3
Query:  242 EQVPKLRKER-EDGLFKPDPRFEEAKQFIRSGAFGSYD---YNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNIT 583
            E++ +LRKE    G+   +P  +E    I    F   D   + P+++ L        GD F V  D  +Y+  Q+RV   +K  ++W K SI +  G G FSSDR+IA+YA  IWN++
Sbjct:  698 EEISELRKEYYPQGICNANPTIQEILDMIAQAKFSQEDKDLFKPIVNRL-----LNEGDPFFVLADLEAYINTQNRVASLFKQPEEWTKKSIYNVGGIGFFSSDRSIAEYASNIWNVS 810          
BLAST of DN618140 vs. ExPASy Swiss-Prot
Match: PYGM_MOUSE (Glycogen phosphorylase, muscle form OS=Mus musculus GN=Pygm PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 4.227e-12
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = -3
Query:  233 DYFLVGYDFPSYLEAQDRVDQAYKDQKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNITECR 421
            D F V  D+  Y++ QD+V + YK+ ++W +M I + A SGKFSSDRTIAQYA+EIW +   R
Sbjct:  770 DRFKVFADYEEYIKCQDKVSELYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSR 832          
BLAST of DN618140 vs. ExPASy Swiss-Prot
Match: PHSG_CHLPN (Glycogen phosphorylase OS=Chlamydia pneumoniae GN=glgP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.227e-12
Identity = 40/117 (34.19%), Postives = 63/117 (53.85%), Query Frame = -3
Query:  245 EQVPKLRKER-EDGLFKPDPRFEEAKQFIRSGAFGSYD---YNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNI 583
            EQ+ +LR+E     +   +P+  +    +  G F S D   + P++  L        GD F V  D  SY+ A + V++ +K+   W K+SI +TAG G FSSDR I  YA++IW++
Sbjct:  703 EQIVQLRREYCPQTICDKNPKIRQVLDLLEQGFFNSNDKDLFKPIVHRL-----LHEGDPFFVLADLESYIAAHENVNKLFKEPDSWTKISIYNTAGMGFFSSDRAIQDYARDIWHV 814          
BLAST of DN618140 vs. ExPASy Swiss-Prot
Match: PYGM_RAT (Glycogen phosphorylase, muscle form OS=Rattus norvegicus GN=Pygm PE=2 SV=5)

HSP 1 Score: 70.8626 bits (172), Expect = 5.521e-12
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = -3
Query:  233 DYFLVGYDFPSYLEAQDRVDQAYKDQKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNITECR 421
            D F V  D+  Y++ QD+V + YK+ ++W +M I + A SGKFSSDRTIAQYA+EIW +   R
Sbjct:  770 DRFKVFADYEEYIKCQDKVSELYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGLEPSR 832          
BLAST of DN618140 vs. ExPASy Swiss-Prot
Match: PYGM_BOVIN (Glycogen phosphorylase, muscle form OS=Bos taurus GN=PYGM PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.230e-11
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = -3
Query:  233 DYFLVGYDFPSYLEAQDRVDQAYKDQKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNITECR 421
            D F V  D+  Y++ Q+RV   YK+ ++W +M I + A SGKFSSDRTIAQYA+EIW +   R
Sbjct:  770 DRFKVFADYEEYIKCQERVSALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPTR 832          
The following BLAST results are available for this feature:
BLAST of DN618140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
PHSG_SYNY35.335e-1548.31Glycogen phosphorylase OS=Synechocystis sp. (strai... [more]
PHSG_SHIFL2.241e-1336.59Glycogen phosphorylase OS=Shigella flexneri GN=glg... [more]
PHSG_ECOLI2.241e-1336.59Glycogen phosphorylase OS=Escherichia coli (strain... [more]
PYG_DROME2.927e-1335.65Glycogen phosphorylase OS=Drosophila melanogaster ... [more]
PHSG_YEAST4.993e-1336.97Glycogen phosphorylase OS=Saccharomyces cerevisiae... [more]
PHSG_CHLTR1.112e-1234.75Glycogen phosphorylase OS=Chlamydia trachomatis GN... [more]
PYGM_MOUSE4.227e-1250.79Glycogen phosphorylase, muscle form OS=Mus musculu... [more]
PHSG_CHLPN4.227e-1234.19Glycogen phosphorylase OS=Chlamydia pneumoniae GN=... [more]
PYGM_RAT5.521e-1250.79Glycogen phosphorylase, muscle form OS=Rattus norv... [more]
PYGM_BOVIN1.230e-1150.79Glycogen phosphorylase, muscle form OS=Bos taurus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02C16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618140 ID=DN618140; Name=DN618140; organism=Citrus sinensis; type=EST; length=594bp
AACCTGGGAAATTCTTATAAAGATAGAATTGTTTAAGAAATTACAACTTA
AAACTTATCTGACAGAGCGATGTTTGAGTAAACAAATGATGGTTAAGACG
GAGAGACAGGTTTATTTAATGATCCCCACAGATTGTGGATTTCCTTTCAT
TTTCTTCCCATCTTAATACATCCTTCCAAGAAATTATATAACCTATTGCA
CATGAAAATTTTTTGCACTTGAATCATGATGTACGGCATTCTGTTATGTT
CCAGATTTCCTTAGCATACTGTGCAATTGTGCGATCACTGCTGAATTTCC
CACTGCCAGCTGTACTTAATATAGACATCTTCAGCCACTTCTTCTGGTCC
TTGTAAGCTTGGTCAACTCTGTCCTGAGCCTCTAAGTAACTTGGGAAGTC
ATAACCAACTAGAAAATAATCACCACGACCATAACCAGTGTTCCCCTCCA
GGGAATCAAGAAGCGGGTTGTAGTCATAGCTTCCAAATGCTCCACTTCTT
ATAAATTGCTTGGCCTCTTCAAACCGAGGATCTGGTTTGAACAATCCATC
TTCTCTTTCCTTACGCAGCTTAGGGACTTGTTCTGCTACTGCAC
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