DN618140

Overview
NameDN618140
Unique NameDN618140
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618140 vs. ExPASy Swiss-Prot
Match: PYGB_PONAB (Glycogen phosphorylase, brain form OS=Pongo abelii GN=PYGB PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.230e-11
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = -3
Query:  245 PRFEEAKQFIRSGAFGSYDYNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNI 529
            P  ++A   I SG F   + N   D +     + R   F V  D+ +Y++ Q +VDQ Y++ K+W K  I + A SGKFSSDRTI +YA+EIW +
Sbjct:  737 PELKQAVDQISSGFFSPKEPNCFKDIVNMLMHHDR---FKVFADYEAYMQCQAQVDQLYRNPKEWTKKVIRNIACSGKFSSDRTITEYAREIWGV 828          
BLAST of DN618140 vs. ExPASy Swiss-Prot
Match: PYGM_SHEEP (Glycogen phosphorylase, muscle form OS=Ovis aries GN=PYGM PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.606e-11
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = -3
Query:  233 DYFLVGYDFPSYLEAQDRVDQAYKDQKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNITECR 421
            D F V  D+  Y++ Q+RV   YK+ ++W +M I + A SGKFSSDRTIAQYA+EIW +   R
Sbjct:  770 DRFKVFADYEEYVKCQERVSALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPTR 832          
BLAST of DN618140 vs. ExPASy Swiss-Prot
Match: PYGM_RABIT (Glycogen phosphorylase, muscle form OS=Oryctolagus cuniculus GN=PYGM PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.606e-11
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = -3
Query:  233 DYFLVGYDFPSYLEAQDRVDQAYKDQKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNITECR 421
            D F V  D+  Y++ Q+RV   YK+ ++W +M I + A SGKFSSDRTIAQYA+EIW +   R
Sbjct:  770 DRFKVFADYEEYVKCQERVSALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSR 832          
BLAST of DN618140 vs. ExPASy Swiss-Prot
Match: PHSG_HAEIN (Glycogen phosphorylase OS=Haemophilus influenzae GN=glgP PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.098e-11
Identity = 42/118 (35.59%), Postives = 62/118 (52.54%), Query Frame = -3
Query:  245 EQVPKLRKE--REDGLFKPDPRFEEAKQFIRSGAFGSYD---YNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNI 583
            EQV +LR+E  R    ++ D +       I  G F   D   Y+ LL  L+ +      DY+    DF SY+E Q  VD+ YK + +W++ +I +    G FSSDRTI +YA+ IW +
Sbjct:  703 EQVEQLRREGYRSFEYYQNDAQLRTVVDQIIEGKFSPEDPQRYHQLLQGLQYH------DYYQAFADFRSYVETQKAVDEKYKQRDQWIESTIQNIVNMGFFSSDRTIKEYAERIWKV 814          
BLAST of DN618140 vs. ExPASy Swiss-Prot
Match: PYGM_MACFA (Glycogen phosphorylase, muscle form OS=Macaca fascicularis GN=PYGM PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.740e-11
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = -3
Query:  233 DYFLVGYDFPSYLEAQDRVDQAYKDQKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNITECR 421
            D F V  D+  Y++ Q++V   YK+ ++W +M I + A SGKFSSDRTIAQYA+EIW +   R
Sbjct:  770 DRFKVFADYEDYIKCQEKVSALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSR 832          
BLAST of DN618140 vs. ExPASy Swiss-Prot
Match: PYGM_HUMAN (Glycogen phosphorylase, muscle form OS=Homo sapiens GN=PYGM PE=1 SV=6)

HSP 1 Score: 68.5514 bits (166), Expect = 2.740e-11
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = -3
Query:  233 DYFLVGYDFPSYLEAQDRVDQAYKDQKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNITECR 421
            D F V  D+  Y++ Q++V   YK+ ++W +M I + A SGKFSSDRTIAQYA+EIW +   R
Sbjct:  770 DRFKVFADYEDYIKCQEKVSALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSR 832          
BLAST of DN618140 vs. ExPASy Swiss-Prot
Match: PHSM_ECOLI (Maltodextrin phosphorylase OS=Escherichia coli (strain K12) GN=malP PE=1 SV=7)

HSP 1 Score: 68.5514 bits (166), Expect = 2.740e-11
Identity = 37/96 (38.54%), Postives = 54/96 (56.25%), Query Frame = -3
Query:  251 KPDPRFEEAKQFIRSGAFGSYDYNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKKWLKMSILSTAGSGKFSSDRTIAQYAKEIW 538
            K D   +   + + SG +   D +   D +  + G   GD +LV  DF +Y+EAQ +VD  Y+DQ+ W + +IL+TA  G FSSDR+I  Y   IW
Sbjct:  699 KKDKVLDAVLKELESGKYSDGDKHAF-DQMLHSIGKQGGDPYLVMADFAAYVEAQKQVDVLYRDQEAWTRAAILNTARCGMFSSDRSIRDYQARIW 793          
BLAST of DN618140 vs. ExPASy Swiss-Prot
Match: PHSG_BACSU (Glycogen phosphorylase OS=Bacillus subtilis GN=glgP PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.740e-11
Identity = 39/101 (38.61%), Postives = 59/101 (58.42%), Query Frame = -3
Query:  245 FKPDPRFEEAKQFIRSGAF-GSYD-YNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNI 541
            ++ D R  +    + +G F G  D +  + DSL         D + V  DF SY +AQ+R+   Y++++KW + SI++ A SG FSSDRTI +YAK+IW I
Sbjct:  699 YQHDRRIRQVADQLINGFFEGEADEFESIFDSL-----LPHNDEYFVLKDFSSYADAQERIQADYRERRKWSEHSIVNIAHSGYFSSDRTIREYAKDIWGI 794          
BLAST of DN618140 vs. ExPASy Swiss-Prot
Match: PYGB_HUMAN (Glycogen phosphorylase, brain form OS=Homo sapiens GN=PYGB PE=1 SV=5)

HSP 1 Score: 67.781 bits (164), Expect = 4.674e-11
Identity = 37/95 (38.95%), Postives = 55/95 (57.89%), Query Frame = -3
Query:  245 PRFEEAKQFIRSGAFGSYDYNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNI 529
            P  ++A   I SG F   + +   D +     + R   F V  D+ +Y++ Q +VDQ Y++ K+W K  I + A SGKFSSDRTI +YA+EIW +
Sbjct:  737 PELKQAVDQISSGFFSPKEPDCFKDIVNMLMHHDR---FKVFADYEAYMQCQAQVDQLYRNPKEWTKKVIRNIACSGKFSSDRTITEYAREIWGV 828          
BLAST of DN618140 vs. ExPASy Swiss-Prot
Match: PYGB_MOUSE (Glycogen phosphorylase, brain form OS=Mus musculus GN=Pygb PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 6.104e-11
Identity = 37/95 (38.95%), Postives = 54/95 (56.84%), Query Frame = -3
Query:  245 PRFEEAKQFIRSGAFGSYDYNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNI 529
            P   +A   I SG F   D +   D +     + R   F V  D+ +Y++ Q +VD+ Y++ K+W K  I + A SGKFSSDRTI +YA+EIW +
Sbjct:  737 PELRQAVDQISSGFFSPKDPDCFKDVVNMLMYHDR---FKVFADYEAYIQCQAQVDRLYRNSKEWTKKVIRNIACSGKFSSDRTITEYAREIWGV 828          
The following BLAST results are available for this feature:
BLAST of DN618140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
PYGB_PONAB1.230e-1140.00Glycogen phosphorylase, brain form OS=Pongo abelii... [more]
PYGM_SHEEP1.606e-1150.79Glycogen phosphorylase, muscle form OS=Ovis aries ... [more]
PYGM_RABIT1.606e-1150.79Glycogen phosphorylase, muscle form OS=Oryctolagus... [more]
PHSG_HAEIN2.098e-1135.59Glycogen phosphorylase OS=Haemophilus influenzae G... [more]
PYGM_MACFA2.740e-1149.21Glycogen phosphorylase, muscle form OS=Macaca fasc... [more]
PYGM_HUMAN2.740e-1149.21Glycogen phosphorylase, muscle form OS=Homo sapien... [more]
PHSM_ECOLI2.740e-1138.54Maltodextrin phosphorylase OS=Escherichia coli (st... [more]
PHSG_BACSU2.740e-1138.61Glycogen phosphorylase OS=Bacillus subtilis GN=glg... [more]
PYGB_HUMAN4.674e-1138.95Glycogen phosphorylase, brain form OS=Homo sapiens... [more]
PYGB_MOUSE6.104e-1138.95Glycogen phosphorylase, brain form OS=Mus musculus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02C16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618140 ID=DN618140; Name=DN618140; organism=Citrus sinensis; type=EST; length=594bp
AACCTGGGAAATTCTTATAAAGATAGAATTGTTTAAGAAATTACAACTTA
AAACTTATCTGACAGAGCGATGTTTGAGTAAACAAATGATGGTTAAGACG
GAGAGACAGGTTTATTTAATGATCCCCACAGATTGTGGATTTCCTTTCAT
TTTCTTCCCATCTTAATACATCCTTCCAAGAAATTATATAACCTATTGCA
CATGAAAATTTTTTGCACTTGAATCATGATGTACGGCATTCTGTTATGTT
CCAGATTTCCTTAGCATACTGTGCAATTGTGCGATCACTGCTGAATTTCC
CACTGCCAGCTGTACTTAATATAGACATCTTCAGCCACTTCTTCTGGTCC
TTGTAAGCTTGGTCAACTCTGTCCTGAGCCTCTAAGTAACTTGGGAAGTC
ATAACCAACTAGAAAATAATCACCACGACCATAACCAGTGTTCCCCTCCA
GGGAATCAAGAAGCGGGTTGTAGTCATAGCTTCCAAATGCTCCACTTCTT
ATAAATTGCTTGGCCTCTTCAAACCGAGGATCTGGTTTGAACAATCCATC
TTCTCTTTCCTTACGCAGCTTAGGGACTTGTTCTGCTACTGCAC
back to top