DN618140

Overview
NameDN618140
Unique NameDN618140
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618140 vs. ExPASy Swiss-Prot
Match: PHSG_PASMU (Glycogen phosphorylase OS=Pasteurella multocida GN=glgP PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.104e-11
Identity = 42/118 (35.59%), Postives = 60/118 (50.85%), Query Frame = -3
Query:  245 EQVPKLRKE--REDGLFKPDPRFEEAKQFIRSGAFGSYD---YNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNI 583
            EQV  LR+   R    ++ D    +    I SG F   D   Y+ LL SL+ +      DY+    DF SY++ Q  VD  Y+DQ  W+  ++ +      FSSDRTI +YA++IW I
Sbjct:  703 EQVESLRRHGYRPFDYYQNDEELRKVVDQIISGRFSPTDANRYHQLLQSLQYH------DYYQAFADFRSYVDMQQNVDAKYQDQNAWIDSTLQNIVNMSYFSSDRTILEYAEKIWKI 814          
BLAST of DN618140 vs. ExPASy Swiss-Prot
Match: PYGL_RAT (Glycogen phosphorylase, liver form OS=Rattus norvegicus GN=Pygl PE=1 SV=5)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = -3
Query:  245 DYFLVGYDFPSYLEAQDRVDQAYKDQKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNI 421
            D F V  D+ +Y++ Q++V Q Y +QK W  M + + A SGKFSSDRTI +YAK+IWN+
Sbjct:  770 DRFKVFADYEAYVKCQEKVSQLYMNQKAWNTMVLRNIAASGKFSSDRTIREYAKDIWNM 828          
BLAST of DN618140 vs. ExPASy Swiss-Prot
Match: PYGL_MOUSE (Glycogen phosphorylase, liver form OS=Mus musculus GN=Pygl PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = -3
Query:  245 DYFLVGYDFPSYLEAQDRVDQAYKDQKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNI 421
            D F V  D+ +Y++ Q++V Q Y +QK W  M + + A SGKFSSDRTI +YAK+IWN+
Sbjct:  770 DRFKVFADYEAYVKCQEKVSQLYMNQKAWNTMVLKNIAASGKFSSDRTIKEYAKDIWNM 828          
The following BLAST results are available for this feature:
BLAST of DN618140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
PHSG_PASMU6.104e-1135.59Glycogen phosphorylase OS=Pasteurella multocida GN... [more]
PYGL_RAT7.972e-1150.85Glycogen phosphorylase, liver form OS=Rattus norve... [more]
PYGL_MOUSE7.972e-1150.85Glycogen phosphorylase, liver form OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02C16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618140 ID=DN618140; Name=DN618140; organism=Citrus sinensis; type=EST; length=594bp
AACCTGGGAAATTCTTATAAAGATAGAATTGTTTAAGAAATTACAACTTA
AAACTTATCTGACAGAGCGATGTTTGAGTAAACAAATGATGGTTAAGACG
GAGAGACAGGTTTATTTAATGATCCCCACAGATTGTGGATTTCCTTTCAT
TTTCTTCCCATCTTAATACATCCTTCCAAGAAATTATATAACCTATTGCA
CATGAAAATTTTTTGCACTTGAATCATGATGTACGGCATTCTGTTATGTT
CCAGATTTCCTTAGCATACTGTGCAATTGTGCGATCACTGCTGAATTTCC
CACTGCCAGCTGTACTTAATATAGACATCTTCAGCCACTTCTTCTGGTCC
TTGTAAGCTTGGTCAACTCTGTCCTGAGCCTCTAAGTAACTTGGGAAGTC
ATAACCAACTAGAAAATAATCACCACGACCATAACCAGTGTTCCCCTCCA
GGGAATCAAGAAGCGGGTTGTAGTCATAGCTTCCAAATGCTCCACTTCTT
ATAAATTGCTTGGCCTCTTCAAACCGAGGATCTGGTTTGAACAATCCATC
TTCTCTTTCCTTACGCAGCTTAGGGACTTGTTCTGCTACTGCAC
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