DN618139

Overview
NameDN618139
Unique NameDN618139
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length441
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618139 vs. ExPASy Swiss-Prot
Match: RC21_ARATH (UPF0057 membrane protein At1g57550 OS=Arabidopsis thaliana GN=At1g57550 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.471e-12
Identity = 25/48 (52.08%), Postives = 40/48 (83.33%), Query Frame = 3
Query:  141 VDILLAVILPPLGVFLKFGCKAEFWICLLMTILGYIPGIIYAVYAITK 284
            +++L A+ +PP+GVFL++G   EFW+CLL+T+  +IPG+IYA+Y +TK
Sbjct:    5 LEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVLTK 52          
BLAST of DN618139 vs. ExPASy Swiss-Prot
Match: RC22_ARATH (UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana GN=At2g24040 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.301e-11
Identity = 30/52 (57.69%), Postives = 41/52 (78.85%), Query Frame = 3
Query:  126 STATCVDILLAVILPPLGVFLKFGC-KAEFWICLLMTILGYIPGIIYAVYAI 278
            S   C +I +A++LPP+GV L+ GC   EF+ICL++T LGY+PGIIYA+YAI
Sbjct:    4 SCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAI 55          
BLAST of DN618139 vs. ExPASy Swiss-Prot
Match: PMP3_GIBZE (Plasma membrane proteolipid 3 OS=Gibberella zeae GN=PMP3 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.699e-11
Identity = 31/46 (67.39%), Postives = 41/46 (89.13%), Query Frame = 3
Query:  147 ILLAVILPPLGVFLKFGCKAEFWICLLMTILGYIPGIIYAVYAITK 284
            I+LA+ILPP+GVFL+ GC A+F+I +L+TILGYIPGII+A+Y I K
Sbjct:   21 IILAIILPPVGVFLERGCGADFFINILLTILGYIPGIIHALYIILK 66          
BLAST of DN618139 vs. ExPASy Swiss-Prot
Match: RC23_ARATH (UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana GN=At4g30650 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.219e-11
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 3
Query:  114 MADGSTATCVDILLAVILPPLGVFLKFGC-KAEFWICLLMTILGYIPGIIYAVYAI 278
            MA      C +IL+A++LPPLGV LK GC   EF ICL++TILGYIPGIIYA+Y I
Sbjct:    1 MASNMEVFC-EILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVI 55          
BLAST of DN618139 vs. ExPASy Swiss-Prot
Match: PMP3_CRYNE (Plasma membrane proteolipid 3 OS=Cryptococcus neoformans GN=PMP3 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.898e-11
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 3
Query:  135 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLMTILGYIPGIIYAVYAITK 284
            TC DI   +LA+ILPPLGVFL+ GC A+  I +L+TILGYIPGII+A+Y I K
Sbjct:    4 TCSDIFKIILAIILPPLGVFLERGCGADLLINILLTILGYIPGIIHALYIILK 56          
BLAST of DN618139 vs. ExPASy Swiss-Prot
Match: Y567_PSEAE (UPF0057 membrane protein PA0567 OS=Pseudomonas aeruginosa GN=PA0567 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.785e-11
Identity = 28/49 (57.14%), Postives = 40/49 (81.63%), Query Frame = 3
Query:  141 VDILLAVILPPLGVFLKFGCKAEFWICLLMTILGYIPGIIYAVYAITKK 287
            + IL+A++LPPLGVFL+ G    FW+ +L+T+LGYIPGI++AVY I K+
Sbjct:    4 IRILIAILLPPLGVFLQVGFGGAFWLNILLTLLGYIPGIVHAVYIIAKR 52          
BLAST of DN618139 vs. ExPASy Swiss-Prot
Match: YCU3_CAEEL (UPF0057 membrane protein T23F2.3 OS=Caenorhabditis elegans GN=T23F2.3 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 3
Query:  135 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLMTILGYIPGIIYAVYAI 278
            TC DI   + AV+LPP+GVFL+ GC     IC+L+TILGYIPGIIYA Y I
Sbjct:    4 TCTDIPKFICAVLLPPIGVFLEKGCDYHLAICILLTILGYIPGIIYACYVI 54          
BLAST of DN618139 vs. ExPASy Swiss-Prot
Match: YCU4_CAEEL (UPF0057 membrane protein T23F2.4 OS=Caenorhabditis elegans GN=T23F2.4 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 6.456e-11
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 3
Query:  135 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLMTILGYIPGIIYAVYAI 278
            TC+DI   L A++LPP+GVFL+ GC     IC+L+TILGYIPGIIYA Y I
Sbjct:    4 TCMDIPKFLFALLLPPVGVFLEKGCTHHLAICILLTILGYIPGIIYACYII 54          
The following BLAST results are available for this feature:
BLAST of DN618139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RC21_ARATH4.471e-1252.08UPF0057 membrane protein At1g57550 OS=Arabidopsis ... [more]
RC22_ARATH1.301e-1157.69UPF0057 membrane protein At2g24040 OS=Arabidopsis ... [more]
PMP3_GIBZE1.699e-1167.39Plasma membrane proteolipid 3 OS=Gibberella zeae G... [more]
RC23_ARATH2.219e-1162.50UPF0057 membrane protein At4g30650 OS=Arabidopsis ... [more]
PMP3_CRYNE2.898e-1164.15Plasma membrane proteolipid 3 OS=Cryptococcus neof... [more]
Y567_PSEAE3.785e-1157.14UPF0057 membrane protein PA0567 OS=Pseudomonas aer... [more]
YCU3_CAEEL4.943e-1162.75UPF0057 membrane protein T23F2.3 OS=Caenorhabditis... [more]
YCU4_CAEEL6.456e-1162.75UPF0057 membrane protein T23F2.4 OS=Caenorhabditis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02C15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618139 ID=DN618139; Name=DN618139; organism=Citrus sinensis; type=EST; length=441bp
AAATAACAAAAGCAGTTACTCAAAACCCTAAGCACTTCTTTAATCAAAGT
TCTTGTTTTTTGACTCTAAATTTTATTTTATTCCATTTTACACTTTTTAA
GAATCAATCAAAGATGGCAGATGGAAGCACAGCAACATGCGTAGATATTC
TCTTGGCTGTTATCTTGCCTCCTCTTGGTGTCTTTCTCAAATTTGGTTGC
AAGGCTGAGTTTTGGATCTGTTTGCTCATGACAATTCTGGGGTATATCCC
TGGAATTATTTATGCTGTTTATGCCATCACCAAGAAGTGATCTCTCGTCT
TCATCTGTAAGTGCCTGTACTCTTTAATTTTGCTCAAAGCTTTTGGAAAT
CTTTTTATGAACTTTTTTTTAATTTATAACCAAGAAAATTGTTAATTTAT
TTACGATTTTACTGAACTTCTGATGATATATATTTACTGAA
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