DN618137

Overview
NameDN618137
Unique NameDN618137
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4_XENLA (40S ribosomal protein S4 OS=Xenopus laevis GN=rps4 PE=2 SV=4)

HSP 1 Score: 207.994 bits (528), Expect = 3.518e-53
Identity = 94/139 (67.63%), Postives = 115/139 (82.73%), Query Frame = -1
Query:  230 EEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 646
            EEAK+KLCKVR    G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  117 EEAKYKLCKVRKTWVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNNFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4X_MONDO (40S ribosomal protein S4, X isoform OS=Monodelphis domestica GN=RPS4X PE=2 SV=3)

HSP 1 Score: 205.682 bits (522), Expect = 1.746e-52
Identity = 94/139 (67.63%), Postives = 114/139 (82.01%), Query Frame = -1
Query:  230 EEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 646
            EEAK+KLCKVR    G K IP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NREKH GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  117 EEAKYKLCKVRKTFVGTKAIPHLVTHDARTIRYPDPLIKMNDTIQIDLETGKITDFIKFDTGNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4Y1_MONDO (40S ribosomal protein S4, Y isoform 1 OS=Monodelphis domestica GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 205.297 bits (521), Expect = 2.280e-52
Identity = 92/139 (66.19%), Postives = 115/139 (82.73%), Query Frame = -1
Query:  230 EEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 646
            EEAK+KLCKVR +    KGIP++ T+D RTIRYPDPLIK NDT++++LE  KITDFIKFD GN+ MVTGG N GR+G+I NREKH GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  117 EEAKYKLCKVRKIFVATKGIPHLVTHDARTIRYPDPLIKVNDTVQINLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 3.890e-52
Identity = 92/139 (66.19%), Postives = 116/139 (83.45%), Query Frame = -1
Query:  230 EEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 646
            EEAK+KLCKV+  Q G KG+P++ T+DGRTIRYPDPLI AND++++D+   KITD+IKFD GN+ M+TGGRN GRVG + NRE+H GSF+ +HI+D+ GH FATRL NVF IGKG+KP++SLPKGKG+KLSI EE  KR
Sbjct:  117 EEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSIAEERDKR 255          
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4_ICTPU (40S ribosomal protein S4 OS=Ictalurus punctatus GN=rps4 PE=2 SV=3)

HSP 1 Score: 204.142 bits (518), Expect = 5.080e-52
Identity = 89/140 (63.57%), Postives = 117/140 (83.57%), Query Frame = -1
Query:  230 DEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 649
            +EEAK+KLCKV+ +  G KGIP++ T+D RTIRYPDP+IKANDT+++DLE  KIT+FIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++D+ G+ FATRL N+F IGKG+K WVS+P+GKGI+L+I EE  KR
Sbjct:  116 NEEAKYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPMIKANDTVRIDLETGKITEFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKAWVSIPRGKGIRLTIAEERDKR 255          
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4B_SCHPO (40S ribosomal protein S4-B OS=Schizosaccharomyces pombe GN=rps4b PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.293e-51
Identity = 97/139 (69.78%), Postives = 111/139 (79.86%), Query Frame = -1
Query:  230 EEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 646
            EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK NDTIKL+LE NKI  FIKFD    VMVTGGRN GRVG I +RE H GSFE IH++DAL  EFATRL NVF IG+  K W+SLPKGKG+KLSI EE  +R
Sbjct:  117 EEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLSITEERDRR 255          
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4C_SCHPO (40S ribosomal protein S4-C OS=Schizosaccharomyces pombe GN=rps4c PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.617e-51
Identity = 97/139 (69.78%), Postives = 111/139 (79.86%), Query Frame = -1
Query:  230 EEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 646
            EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK NDTIKL+LE NKI  FIKFD    VMVTGGRN GRVG I +RE H GSFE IH++DAL  EFATRL NVF IG+  K W+SLPKGKG+KLSI EE  +R
Sbjct:  117 EEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRR 255          
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4A_SCHPO (40S ribosomal protein S4-A OS=Schizosaccharomyces pombe GN=rps4a PE=2 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 5.617e-51
Identity = 97/139 (69.78%), Postives = 111/139 (79.86%), Query Frame = -1
Query:  230 EEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 646
            EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK NDTIKL+LE NKI  FIKFD    VMVTGGRN GRVG I +RE H GSFE IH++DAL  EFATRL NVF IG+  K W+SLPKGKG+KLSI EE  +R
Sbjct:  117 EEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRR 255          
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4Y1_MACFU (40S ribosomal protein S4, Y isoform 1 OS=Macaca fuscata fuscata GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 199.904 bits (507), Expect = 9.581e-51
Identity = 88/139 (63.31%), Postives = 112/139 (80.58%), Query Frame = -1
Query:  230 EEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 646
            EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL   KIT FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR+ N+F IG G+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  117 EEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPVIKVNDTVRIDLGSGKITSFIKFDTGNVCMVIGGANLGRVGVITNRERHPGSFDVVHVKDASGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4_CARGR (40S ribosomal protein S4 OS=Carabus granulatus GN=RpS4 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.251e-50
Identity = 93/139 (66.91%), Postives = 114/139 (82.01%), Query Frame = -1
Query:  230 EEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 646
            EEAK+KLCKV+ VQ G KGIP++ T+DGRTIRYPDP+IK NDTI+L++  +KI D IKFD GN+ M+TGGRN GRVG + NRE+H GSF+ +HI+D+ GH FA RL NVF IGKGSK +VSLP+GKG+KLSI EE  KR
Sbjct:  117 EEAKYKLCKVKRVQTGPKGIPFLVTHDGRTIRYPDPIIKVNDTIQLEIANSKIMDSIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHTFANRLNNVFIIGKGSKAYVSLPRGKGVKLSIAEERDKR 255          
The following BLAST results are available for this feature:
BLAST of DN618137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RS4_XENLA3.518e-5367.6340S ribosomal protein S4 OS=Xenopus laevis GN=rps4... [more]
RS4X_MONDO1.746e-5267.6340S ribosomal protein S4, X isoform OS=Monodelphis... [more]
RS4Y1_MONDO2.280e-5266.1940S ribosomal protein S4, Y isoform 1 OS=Monodelph... [more]
RS4_DROME3.890e-5266.1940S ribosomal protein S4 OS=Drosophila melanogaste... [more]
RS4_ICTPU5.080e-5263.5740S ribosomal protein S4 OS=Ictalurus punctatus GN... [more]
RS4B_SCHPO3.293e-5169.7840S ribosomal protein S4-B OS=Schizosaccharomyces ... [more]
RS4C_SCHPO5.617e-5169.7840S ribosomal protein S4-C OS=Schizosaccharomyces ... [more]
RS4A_SCHPO5.617e-5169.7840S ribosomal protein S4-A OS=Schizosaccharomyces ... [more]
RS4Y1_MACFU9.581e-5163.3140S ribosomal protein S4, Y isoform 1 OS=Macaca fu... [more]
RS4_CARGR1.251e-5066.9140S ribosomal protein S4 OS=Carabus granulatus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02C14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618137 ID=DN618137; Name=DN618137; organism=Citrus sinensis; type=EST; length=652bp
CTTAGATTAAATAGTTGAAAATAACATCCACCAAATAGTAGCTAAAATAA
AAAAAGGACAAAGCAGGTTCAAAATTGTGCTGATAAAATAAAAATAAAGA
TTCATTTTTGCATCCGTCCTACTTCAGCTTTAGAGAGTGCCAATCAGCTC
TAATTCAACAAGAAAAAACAAAGCAGCAAAATGTATCCAAATTCATTGTA
AAAGCTTAAGCAGCAGCCTGGGCAGCCTGTCTCTTCCTAGCTTCCTCAAT
GATGGACAACTTAATACCCTTGCCCTTAGGAAGTGACACCCATGGTTTTG
AACCCTTCCCGATGGTGAACACATTGCCTAGACGAGTTGCAAACTCATGA
CCAAGGGCATCTTGAATATGGATGGTCTCAAAACTTCCCTTATGCTTTTC
CCTGTTCTTGATGATTCCAACCCGACCTCTGTTTCTACCCCCAGTGACCA
TGACAATATTCCCAACATCAAACTTGATGAAGTCAGTGATCTTGTTCTCT
TCTAAGTCAAGTTTGATGGTATCATTGGCTTTGATGAGTGGGTCAGGGTA
GCGGATGGTACGCCCATCATAGGTGTTGATGTATGGGATACCTTTCTGGC
CAAACTGGACTGATCTAACTTTGCAAAGCTTGAATTTTGCCTCCTCATCT
CT
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