DN618137

Overview
NameDN618137
Unique NameDN618137
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4_LYSTE (40S ribosomal protein S4 OS=Lysiphlebus testaceipes GN=RpS4 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.134e-50
Identity = 92/140 (65.71%), Postives = 115/140 (82.14%), Query Frame = -1
Query:  230 DEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 649
            +EEAK+KLCKVR VQ G KG+P++ T+DGRT+RYPDP+IK NDTI+L++  NKI D IKFD GN+ M+TGGRN GRVG + +RE+H GSF+  HI+D+ GH FATR+ NVF IGKGSK +VSLP+GKG+KLSI EE  KR
Sbjct:  116 NEEAKYKLCKVRRVQTGPKGVPFLVTHDGRTLRYPDPVIKVNDTIQLEIATNKILDSIKFDSGNLCMITGGRNLGRVGTVVSRERHPGSFDICHIKDSQGHTFATRMNNVFIIGKGSKAYVSLPRGKGVKLSIAEERDKR 255          
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4Y1_PONPY (40S ribosomal protein S4, Y isoform 1 OS=Pongo pygmaeus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 2.788e-50
Identity = 88/139 (63.31%), Postives = 112/139 (80.58%), Query Frame = -1
Query:  230 EEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 646
            EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDT+++DL   KI +FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR+ N+F IG G+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  117 EEAKYKLCKVRKITVGMKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKIINFIKFDTGNVCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4_IXOSC (40S ribosomal protein S4 OS=Ixodes scapularis GN=RpS4 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.755e-50
Identity = 87/139 (62.59%), Postives = 113/139 (81.29%), Query Frame = -1
Query:  230 EEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 646
            EEAK+KLC+V+ VQ G KG+P++ T+D RTIRYPDPLIK NDT+K+DL   KI D+IKFD GN+ MVTGG N GRVG+I +RE+H GSF+ +H++D+ GH FATRL  +F IGK +KP++SLP+GKGIKLS+ EE  +R
Sbjct:  117 EEAKYKLCRVKRVQVGPKGVPFLTTHDARTIRYPDPLIKVNDTVKVDLATGKIDDYIKFDSGNVCMVTGGHNLGRVGVITSRERHPGSFDIVHVKDSQGHSFATRLNYIFVIGKSTKPYISLPRGKGIKLSVAEERDRR 255          
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4Y2_PANTR (40S ribosomal protein S4, Y isoform 2 OS=Pan troglodytes GN=RPS4Y2 PE=2 SV=3)

HSP 1 Score: 196.438 bits (498), Expect = 1.059e-49
Identity = 87/139 (62.59%), Postives = 111/139 (79.86%), Query Frame = -1
Query:  230 EEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 646
            EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDT+++DL   KIT FIKFD GN+ MV GG N GRVG++ NRE+H GS + +H++DA G+ FATR+ N+F IG G+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  117 EEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNVCMVIGGANLGRVGVVTNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4Y1_HUMAN (40S ribosomal protein S4, Y isoform 1 OS=Homo sapiens GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.059e-49
Identity = 87/139 (62.59%), Postives = 112/139 (80.58%), Query Frame = -1
Query:  230 EEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 646
            EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL   KI +FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATRL N+F IG G+KPW+SLP+GKGI+L++ EE  KR
Sbjct:  117 EEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAEERDKR 255          
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4Y1_GORGO (40S ribosomal protein S4, Y isoform 1 OS=Gorilla gorilla gorilla GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 1.807e-49
Identity = 86/139 (61.87%), Postives = 112/139 (80.58%), Query Frame = -1
Query:  230 EEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 646
            EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL   KI +FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR+ N+F IG G+KPW+SLP+GKGI+L++ EE  KR
Sbjct:  117 EEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTVAEERDKR 255          
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4_YARLI (40S ribosomal protein S4 OS=Yarrowia lipolytica GN=RPS4 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.082e-49
Identity = 93/140 (66.43%), Postives = 113/140 (80.71%), Query Frame = -1
Query:  230 DEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 649
            DEEA +KL KV+ VQ G+KGIPY+ T+DGRTIRYPDPLIK NDT+K+DL   KIT F+KF+ GNIVM TGGRN GRVG I +RE+H+G F+ +HI+DAL ++F TRL NVF IG+G+K  +SLPKGKGIKLSI EE   R
Sbjct:  116 DEEAAYKLGKVKRVQVGKKGIPYLVTHDGRTIRYPDPLIKVNDTVKIDLATGKITSFVKFENGNIVMTTGGRNMGRVGTITHRERHEGGFDIVHIKDALDNQFVTRLTNVFVIGEGNKSLISLPKGKGIKLSIAEERDAR 255          
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4_BOMMO (40S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.082e-49
Identity = 90/139 (64.75%), Postives = 113/139 (81.29%), Query Frame = -1
Query:  230 EEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 646
            EEAK+KLCKV+ V  G K +PY+ T+DGRTIRYPDPLIK ND+I+LD+   KI DFIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+D+ GH FATRL NVF IGKG+K ++SLP+GKGI+L+I EE  KR
Sbjct:  117 EEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKR 255          
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4Y2_HUMAN (40S ribosomal protein S4, Y isoform 2 OS=Homo sapiens GN=RPS4Y2 PE=1 SV=3)

HSP 1 Score: 194.512 bits (493), Expect = 4.025e-49
Identity = 87/139 (62.59%), Postives = 110/139 (79.14%), Query Frame = -1
Query:  230 EEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 646
            EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDT+++DL   KIT FIKFD GN+ MV  G N GRVG+I NRE+H GS + +H++DA G+ FATR+ N+F IG G+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  117 EEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNVCMVIAGANLGRVGVITNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANTR (40S ribosomal protein S4, Y isoform 1 OS=Pan troglodytes GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 5.257e-49
Identity = 86/139 (61.87%), Postives = 111/139 (79.86%), Query Frame = -1
Query:  230 EEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 646
            EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL   KI +FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATRL N+F IG G+KPW+SLP+GKGI+L++  E  KR
Sbjct:  117 EEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAAERDKR 255          
The following BLAST results are available for this feature:
BLAST of DN618137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RS4_LYSTE2.134e-5065.7140S ribosomal protein S4 OS=Lysiphlebus testaceipe... [more]
RS4Y1_PONPY2.788e-5063.3140S ribosomal protein S4, Y isoform 1 OS=Pongo pyg... [more]
RS4_IXOSC4.755e-5062.5940S ribosomal protein S4 OS=Ixodes scapularis GN=R... [more]
RS4Y2_PANTR1.059e-4962.5940S ribosomal protein S4, Y isoform 2 OS=Pan trogl... [more]
RS4Y1_HUMAN1.059e-4962.5940S ribosomal protein S4, Y isoform 1 OS=Homo sapi... [more]
RS4Y1_GORGO1.807e-4961.8740S ribosomal protein S4, Y isoform 1 OS=Gorilla g... [more]
RS4_YARLI3.082e-4966.4340S ribosomal protein S4 OS=Yarrowia lipolytica GN... [more]
RS4_BOMMO3.082e-4964.7540S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE... [more]
RS4Y2_HUMAN4.025e-4962.5940S ribosomal protein S4, Y isoform 2 OS=Homo sapi... [more]
RS4Y1_PANTR5.257e-4961.8740S ribosomal protein S4, Y isoform 1 OS=Pan trogl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02C14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618137 ID=DN618137; Name=DN618137; organism=Citrus sinensis; type=EST; length=652bp
CTTAGATTAAATAGTTGAAAATAACATCCACCAAATAGTAGCTAAAATAA
AAAAAGGACAAAGCAGGTTCAAAATTGTGCTGATAAAATAAAAATAAAGA
TTCATTTTTGCATCCGTCCTACTTCAGCTTTAGAGAGTGCCAATCAGCTC
TAATTCAACAAGAAAAAACAAAGCAGCAAAATGTATCCAAATTCATTGTA
AAAGCTTAAGCAGCAGCCTGGGCAGCCTGTCTCTTCCTAGCTTCCTCAAT
GATGGACAACTTAATACCCTTGCCCTTAGGAAGTGACACCCATGGTTTTG
AACCCTTCCCGATGGTGAACACATTGCCTAGACGAGTTGCAAACTCATGA
CCAAGGGCATCTTGAATATGGATGGTCTCAAAACTTCCCTTATGCTTTTC
CCTGTTCTTGATGATTCCAACCCGACCTCTGTTTCTACCCCCAGTGACCA
TGACAATATTCCCAACATCAAACTTGATGAAGTCAGTGATCTTGTTCTCT
TCTAAGTCAAGTTTGATGGTATCATTGGCTTTGATGAGTGGGTCAGGGTA
GCGGATGGTACGCCCATCATAGGTGTTGATGTATGGGATACCTTTCTGGC
CAAACTGGACTGATCTAACTTTGCAAAGCTTGAATTTTGCCTCCTCATCT
CT
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