DN618137

Overview
NameDN618137
Unique NameDN618137
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANPA (40S ribosomal protein S4, Y isoform 1 OS=Pan paniscus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 5.257e-49
Identity = 86/139 (61.87%), Postives = 111/139 (79.86%), Query Frame = -1
Query:  230 EEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 646
            EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL   KI +FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATRL N+F IG G+KPW+SLP+GKGI+L++  E  KR
Sbjct:  117 EEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAAERDKR 255          
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4_SPOFR (40S ribosomal protein S4 OS=Spodoptera frugiperda GN=RpS4 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 8.968e-49
Identity = 87/139 (62.59%), Postives = 114/139 (82.01%), Query Frame = -1
Query:  230 EEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 646
            EEAK+KLCKV+ V  G K +P++ T+DGRTIRYPDPLIK ND+++LD+  +KI DFIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+D+ GH FATRL NVF IGKG+K ++SLP+GKG++L+I EE  KR
Sbjct:  117 EEAKYKLCKVKRVSTGPKNVPFLVTHDGRTIRYPDPLIKVNDSVQLDIATSKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGVRLTIAEERDKR 255          
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4_YEAST (40S ribosomal protein S4 OS=Saccharomyces cerevisiae GN=RPS4A PE=1 SV=3)

HSP 1 Score: 192.971 bits (489), Expect = 1.171e-48
Identity = 89/140 (63.57%), Postives = 111/140 (79.29%), Query Frame = -1
Query:  230 DEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 649
            DEEA +KL KV+ VQ G+KG+PY+ T+DGRTIRYPDP IK NDT+K+DL   KITDFIKFD G +V VTGGRN GR+G I ++E+H G F+ +HI+D+L + F TRL NVF IG+  KP++SLPKGKGIKLSI EE  +R
Sbjct:  116 DEEASYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPNIKVNDTVKIDLASGKITDFIKFDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGKPYISLPKGKGIKLSIAEERDRR 255          
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4_CANAL (40S ribosomal protein S4 OS=Candida albicans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.408e-48
Identity = 93/140 (66.43%), Postives = 112/140 (80.00%), Query Frame = -1
Query:  230 EEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIG-KGSKPWVSLPKGKGIKLSIIEEARKR 646
            EEA +KL KV+ VQ G+KG+PY+ T+DGRTIRYPDPLI+ANDT+K+DL   KI  FIKFD G +VMVTGGRN GRVG+I +REK +G F+ +HI+DAL + F TRL NVF IG +  KPWVSLPKGKGIKLSI EE  +R
Sbjct:  117 EEAVYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPLIRANDTVKIDLATGKIXSFIKFDTGRLVMVTGGRNLGRVGVIVHREKLEGGFDLVHIKDALENTFVTRLSNVFVIGTEAGKPWVSLPKGKGIKLSISEERDRR 256          
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4_DICDI (40S ribosomal protein S4 OS=Dictyostelium discoideum GN=rps4 PE=1 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 2.527e-43
Identity = 80/135 (59.26%), Postives = 103/135 (76.30%), Query Frame = -1
Query:  242 EEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEE 646
            EEAKFKL +V  V+ G +GIPY++T DGRTIRYPDP I  +DTIK+D+E  KIT FI F+V N+ M+ GG N GRVG + +REKH GSF+ +H+ D  GH+FATRL NVF IGK S+ +VSLP GKG++ S ++E
Sbjct:  117 EEAKFKLARVTRVETGNQGIPYVHTDDGRTIRYPDPAISIHDTIKIDIESGKITAFIPFEVNNLCMIVGGHNLGRVGAVTHREKHPGSFDIVHVTDTAGHQFATRLSNVFIIGKASQTFVSLPAGKGVRRSRVDE 251          
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4_CAEEL (40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.794e-42
Identity = 84/138 (60.87%), Postives = 103/138 (74.64%), Query Frame = -1
Query:  230 EAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 643
            EA FKLCKV+SV+   KG+P + T DGRTIRYPDP +K NDTI  ++   KITD +KF+ GN+  VTGGRN GRVGII +RE+  G+ + IHI+D+ GH FATR+ NVF IGKG+K  VSLP G GI+LSI EE  KR
Sbjct:  117 EADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGAGIRLSIAEERDKR 254          
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4_TETTH (40S ribosomal protein S4 OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.908e-36
Identity = 70/139 (50.36%), Postives = 99/139 (71.22%), Query Frame = -1
Query:  230 EEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 646
            EEAK+KL KV +   G   IPYI T+D RTIR+P+P IK  DT+K DL  NKI +F   + GN+  +  G N GRVGII++ EKH+GSF+  H++DA G+ FATRLGN+F +G+G K ++ LP G G++ +I+EE +++
Sbjct:  118 EEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQGKKLYIELPSGDGVRETILEERKRK 256          
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4_HORSE (40S ribosomal protein S4 (Fragment) OS=Equus caballus GN=RPS4 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.533e-35
Identity = 66/97 (68.04%), Postives = 81/97 (83.51%), Query Frame = -1
Query:  356 EEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDA 646
            EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA
Sbjct:   98 EEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDA 194          
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4_ENCCU (40S ribosomal protein S4 OS=Encephalitozoon cuniculi GN=RPS4 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.367e-14
Identity = 47/136 (34.56%), Postives = 78/136 (57.35%), Query Frame = -1
Query:  242 EEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKP-WVSLPKGKGIKLSIIEE 646
            EEA ++L KV   ++  +GIPYI +  G +IR+ DP I    TIK+  E +K+ ++I      ++ V+ G+ RGRVG+I N    +G      + D  G+ F+    +   IG+ S+  W++LPK +GI+ S +E+
Sbjct:  117 EEASYRLTKVTK-KYENQGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGKARGRVGVI-NTISTQGKETVYGMTDFAGNTFSCTSKSCILIGESSENIWITLPKERGIRQSELEK 250          
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4E_DESK1 (30S ribosomal protein S4e OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps4e PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.649e-13
Identity = 49/134 (36.57%), Postives = 72/134 (53.73%), Query Frame = -1
Query:  272 EEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPLIKANDT------IKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETI-HIQDALGHEFATRLGNVFTIGKGSKPWVSLPKG 646
            EEA FKLC++ +    + G   +N +DGR   IR  DP     DT      +KL +   +I D++    G I +V+GGRN GRVG I +  K    + +I  ++D  G++F T L  +F IG   KP + LP+G
Sbjct:  118 EEASFKLCRIENKTTVKNGHIQLNLHDGRNVLIRVNDPRNPVEDTYDTLGVLKLSIPVQQILDYVPLKEGVIAIVSGGRNVGRVGKIVSIHKGMRRYRSIVTLEDKQGNKFQTSLDYIFPIGV-EKPLIKLPEG 250          
The following BLAST results are available for this feature:
BLAST of DN618137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RS4Y1_PANPA5.257e-4961.8740S ribosomal protein S4, Y isoform 1 OS=Pan panis... [more]
RS4_SPOFR8.968e-4962.5940S ribosomal protein S4 OS=Spodoptera frugiperda ... [more]
RS4_YEAST1.171e-4863.5740S ribosomal protein S4 OS=Saccharomyces cerevisi... [more]
RS4_CANAL3.408e-4866.4340S ribosomal protein S4 OS=Candida albicans GN=RP... [more]
RS4_DICDI2.527e-4359.2640S ribosomal protein S4 OS=Dictyostelium discoide... [more]
RS4_CAEEL2.794e-4260.8740S ribosomal protein S4 OS=Caenorhabditis elegans... [more]
RS4_TETTH3.908e-3650.3640S ribosomal protein S4 OS=Tetrahymena thermophil... [more]
RS4_HORSE2.533e-3568.0440S ribosomal protein S4 (Fragment) OS=Equus cabal... [more]
RS4_ENCCU9.367e-1434.5640S ribosomal protein S4 OS=Encephalitozoon cunicu... [more]
RS4E_DESK14.649e-1336.5730S ribosomal protein S4e OS=Desulfurococcus kamch... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02C14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618137 ID=DN618137; Name=DN618137; organism=Citrus sinensis; type=EST; length=652bp
CTTAGATTAAATAGTTGAAAATAACATCCACCAAATAGTAGCTAAAATAA
AAAAAGGACAAAGCAGGTTCAAAATTGTGCTGATAAAATAAAAATAAAGA
TTCATTTTTGCATCCGTCCTACTTCAGCTTTAGAGAGTGCCAATCAGCTC
TAATTCAACAAGAAAAAACAAAGCAGCAAAATGTATCCAAATTCATTGTA
AAAGCTTAAGCAGCAGCCTGGGCAGCCTGTCTCTTCCTAGCTTCCTCAAT
GATGGACAACTTAATACCCTTGCCCTTAGGAAGTGACACCCATGGTTTTG
AACCCTTCCCGATGGTGAACACATTGCCTAGACGAGTTGCAAACTCATGA
CCAAGGGCATCTTGAATATGGATGGTCTCAAAACTTCCCTTATGCTTTTC
CCTGTTCTTGATGATTCCAACCCGACCTCTGTTTCTACCCCCAGTGACCA
TGACAATATTCCCAACATCAAACTTGATGAAGTCAGTGATCTTGTTCTCT
TCTAAGTCAAGTTTGATGGTATCATTGGCTTTGATGAGTGGGTCAGGGTA
GCGGATGGTACGCCCATCATAGGTGTTGATGTATGGGATACCTTTCTGGC
CAAACTGGACTGATCTAACTTTGCAAAGCTTGAATTTTGCCTCCTCATCT
CT
back to top