DN618137
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4E_STAMF (30S ribosomal protein S4e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4e PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.929e-13 Identity = 48/137 (35.04%), Postives = 77/137 (56.20%), Query Frame = -1 Query: 272 EEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDP------LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG----IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKG 646 EEAK+KL ++ + + G +N +DGR I+ DP + K T+++ + E +I ++I D G +V+++GGRN GRVG I K +H+ + I+D G++F T L VF IGK +P + LP+G Sbjct: 118 EEAKYKLSRIENKTTVKGGHIQLNLHDGRNVLIKVSDPKNPVEDIYKTLGTLQISIPEQQILNYIPLDEGTLVIISGGRNVGRVGKVVSIHKGIRRHR---SIVTIEDKHGNKFQTSLTYVFPIGK-EEPLIKLPEG 250
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4E_HYPBU (30S ribosomal protein S4e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4e PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.140e-12 Identity = 45/135 (33.33%), Postives = 71/135 (52.59%), Query Frame = -1 Query: 272 EEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPL-------IKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIG-KGSKPWVSLPKG 646 EEA+FKL ++ + G ++ +DGR IR DP K T+K+ + E ++ + +VG++V++ GGRN GRVG I + + + I+DA G + T L VF I +PW+SLP+G Sbjct: 118 EEAQFKLGRIEDKSTVKGGHIQLHLHDGRNVLIRVSDPTNPVEAKPYKTLGTVKISIPEQQLLGYAPLEVGSLVIIFGGRNVGRVGRIVSIQPGMRRRGIVTIEDARGEKIQTSLEYVFVIAPPNEEPWISLPEG 252
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4E_AERPE (30S ribosomal protein S4e OS=Aeropyrum pernix GN=rps4e PE=3 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12 Identity = 47/135 (34.81%), Postives = 73/135 (54.07%), Query Frame = -1 Query: 272 DEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI--RYPDP------LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFET-IHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKG 649 +EE K ++ + + G +N +DGR I R DP + + DT+ + + +I IKF G I ++ GGRN GRVG++K+ +K G T + ++DA G+ F T L VF IG +P +SLP+G Sbjct: 117 EEEGDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQTSLDYVFVIGL-DRPVISLPEG 250
BLAST of DN618137 vs. ExPASy Swiss-Prot
Match: RS4E_METTH (30S ribosomal protein S4e OS=Methanobacterium thermoautotrophicum GN=rps4e PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.682e-11 Identity = 45/128 (35.16%), Postives = 66/128 (51.56%), Query Frame = -1 Query: 269 DEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSF-ETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGK 649 +E A FKLCK+ + + G +N +DGR D + D +KL + E +I + I F+ ++ +VTGGR+ G +G IK + S T I+ G F T VF IGK + +SLP GK Sbjct: 117 EENAGFKLCKIVNKTTIKGGRTQLNLHDGRNYLSDDEF-RVGDVVKLSIPEQEILERIPFEKDSLGLVTGGRHTGEIGKIKKINITRSSMPNTAVIETGAGKTFLTLKDYVFVIGK-DESVISLPGGK 242 The following BLAST results are available for this feature:
BLAST of DN618137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 54
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Sequences
The
following sequences are available for this feature:
EST sequence >DN618137 ID=DN618137; Name=DN618137; organism=Citrus sinensis; type=EST; length=652bpback to top |