DN618136

Overview
NameDN618136
Unique NameDN618136
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618136 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 8.182e-29
Identity = 62/90 (68.89%), Postives = 73/90 (81.11%), Query Frame = -3
Query:  314 ALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 583
            ALRARVYDDEVR W            LVNSKE  PTFEQP++T+EKLLEYG+M+V EQENVKRVQLADKYL+EAALGEAN DA+++G+F+
Sbjct:  343 ALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432          
BLAST of DN618136 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.381e-28
Identity = 62/89 (69.66%), Postives = 70/89 (78.65%), Query Frame = -3
Query:  317 ALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNF 583
            ALRARVYDDEVR W            L+NS +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+ANADAI +GNF
Sbjct:  351 ALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439          
BLAST of DN618136 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.182e-27
Identity = 60/87 (68.97%), Postives = 69/87 (79.31%), Query Frame = -3
Query:  323 ALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSG 583
            ALRARVYDDEVR W            L+NS++  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+ANADAI +G
Sbjct:  346 ALRARVYDDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432          
BLAST of DN618136 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.015e-27
Identity = 60/90 (66.67%), Postives = 71/90 (78.89%), Query Frame = -3
Query:  314 ALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 583
            ALRARVYDDEVR W            LVNSKE  PTF+QP+MT++KLL Y +M+VQEQENVKRVQLAD+YL+EAALG AN DAI+SG+F+
Sbjct:  351 ALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440          
BLAST of DN618136 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.710e-18
Identity = 45/66 (68.18%), Postives = 52/66 (78.79%), Query Frame = -3
Query:  386 ALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQL 583
            ALRARVYDDEVR W           +LVNSKE+ PTF+QP+MT+EKLLEYGNM+V EQENVKRV+L
Sbjct:  344 ALRARVYDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409          
The following BLAST results are available for this feature:
BLAST of DN618136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RCA_MAIZE8.182e-2968.89Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC2.381e-2869.66Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN1.182e-2768.97Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU2.015e-2766.67Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA1.710e-1868.18Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02C14_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618136 ID=DN618136; Name=DN618136; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTGATCGAATAAAGAGTTGTGATATAACACAAAAT
TAGAGGATTCTTTCTAATTAACAAAGAAATGAAAATGCAACAATATTATT
TGAATATCTCACATCCTAAGCAAAGTGCGACACTTCTCAACCCTTAGAAA
CAAGGCCTAAAGCGTGTATTGGCAGCTTCCATCATCACTTCTTGCAGTTG
GATCAAAGTTTTCTGCAGTAGGATCAGTACATCCTTCAGGAACTGGAACA
TTCATTTGCTGGGCTGCTTTGCCTCCCATCAAGGCCTCTTAGCTAGGATC
AAGGGGGCTAACCATAGAAATTTCCACTCTGAATAGCATCTGCATTAGCT
TCACCAAGAGCGGCCTCACTCAAATACTTGTCAGCCAACTGAACTCTCTT
CACATTCTCTTGCTCTTGCACAATCATGTTTCCGTACTCGAGCAGCTTCT
CCATTGTCATCCTTGGTTGCTCGAATGTTGGGGCTGCTTCCTTTGAGTTC
ACAAGGCTCTTGCCAATGCTTCCAACACCAATACCAGAGATCCAATTCCT
CACCTCATCATCATAGACTCTGGCCCTCAGGGCTC
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