DN618089

Overview
NameDN618089
Unique NameDN618089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length494
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618089 vs. ExPASy Swiss-Prot
Match: UBC6_ASHGO (Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossypii GN=UBC6 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.383e-11
Identity = 39/138 (28.26%), Postives = 66/138 (47.83%), Query Frame = 1
Query:   13 INKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARS 417
            ++KE K + ++PP    A P  D++  W   I GP ++P+  G +  ++ FP DYPF PP +   T   +     N  +CL   D   + W+P+ +++ +L  + S +T           I  M  TD  K +  A+S
Sbjct:   10 LSKEYKMMTENPPPYIVAAPKEDNILVWHYVITGPPETPYEDGQYHGTLVFPNDYPFNPPAIRMLTP--NGRFRENTRLCLSMSDYHPDTWNPSWSVATILTGLLSFMTTDE------SSIGTMESTDSTKRKYAAKS 139          
BLAST of DN618089 vs. ExPASy Swiss-Prot
Match: UBC6_CANGA (Ubiquitin-conjugating enzyme E2 6 OS=Candida glabrata GN=UBC6 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.806e-11
Identity = 34/112 (30.36%), Postives = 58/112 (51.79%), Query Frame = 1
Query:    4 QNWINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLT 330
            Q  + KE K + ++PP    A P  +++  W   I GP D+P+ GG +  ++ FP DYP+KPP +   T   +     N  +CL   D   + W+P  +++ +L  + S +T
Sbjct:    7 QKRLTKEYKMMVENPPPFIIARPNEENILEWHYVISGPPDTPYDGGQYHGTLTFPSDYPYKPPAIRMITP--NGRFKENTRLCLSMSDYHPDTWNPGWSVATILNGLLSFMT 116          
BLAST of DN618089 vs. ExPASy Swiss-Prot
Match: UBC6_KLULA (Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces lactis GN=UBC6 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.081e-11
Identity = 34/109 (31.19%), Postives = 54/109 (49.54%), Query Frame = 1
Query:   13 INKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLT 330
            + KE K++  +PP    A P  D++  W   I GP  +P+  G +  ++ FP DYPF PP +   T   +     N  +CL   D   E W+PA ++  +L  + S +T
Sbjct:   10 LTKEYKNIVNNPPPFIIAAPHEDNILEWHYVITGPPSTPYENGQYHGTLTFPSDYPFNPPAIRMITP--NGRFKENTRLCLSMSDYHPEAWNPAWSVVTILNGLLSFMT 116          
BLAST of DN618089 vs. ExPASy Swiss-Prot
Match: UBC6_DEBHA (Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces hansenii GN=UBC6 PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.024e-11
Identity = 35/112 (31.25%), Postives = 57/112 (50.89%), Query Frame = 1
Query:    4 QNWINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLT 330
            Q  + KE K +  +PP   SA P  +++  W   I GP  +PF  G +   + FP +YPFKPP ++  T   +     N  +CL   D   + W+PA +++ +L  + S +T
Sbjct:    7 QKRLTKEYKAITLNPPPYVSAKPNDENILEWHYVITGPPHTPFEEGQYHGILRFPSEYPFKPPSISMITP--NGRFACNTRLCLSMSDYHPDTWNPAWSVATILTGLLSFMT 116          
The following BLAST results are available for this feature:
BLAST of DN618089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 264
Match NameE-valueIdentityDescription
UBC6_ASHGO1.383e-1128.26Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossyp... [more]
UBC6_CANGA1.806e-1130.36Ubiquitin-conjugating enzyme E2 6 OS=Candida glabr... [more]
UBC6_KLULA3.081e-1131.19Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces... [more]
UBC6_DEBHA4.024e-1131.25Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02B13_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002B13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618089 ID=DN618089; Name=DN618089; organism=Citrus sinensis; type=EST; length=494bp
CTTCAAAACTGGATCAACAAGGAGTTGAAGGACCTACAGAAGGACCCTCC
TGCTTCTTGTAGCGCTGGCCCTGTTGCTGATGACATGTTCCATTGGCAAG
CAACAATTATGGGCCCATCAGACAGCCCATTTGCTGGGGGTGTATTTCTT
GTATCCATTCATTTCCCACCTGATTATCCATTCAAGCCACCGAAGGTGGC
CTTCCGTACTAAGGTTTTCCACCCTAACATCAACAGCAATGGTAGCATCT
GTCTTGACATTCTCAAGGAGCAGTGGAGCCCTGCTTTGACAATATCCAAG
GTACTTCTGTCAATTTGCTCACTACTTACTGATCCGAACCCAGATGACCC
ACTTGTGCCTGAGATTGCTCACATGTACAAGACTGACAGAGCCAAATATG
AGACTACTGCTCGATCCTGGACTCAGAAGTATGCCATGGGTTAAGAGGGG
CTAGGCTGTATGCCCCTGAGAACATTAATGGCTTGTGGTCCTAT
back to top