DN618073

Overview
NameDN618073
Unique NameDN618073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618073 vs. ExPASy Swiss-Prot
Match: GBRL2_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Mus musculus GN=Gabarapl2 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.872e-36
Identity = 69/116 (59.48%), Postives = 91/116 (78.45%), Query Frame = -1
Query:  191 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 538
            K  FK +H LE R  ESA+IR KYPDR+PVIVEK   + + DIDK+KYLVP+D++V QF++++RKRI+L +EKAIF+FV  T+P +   M  +YE+ KDEDGFLY+ YSGENTFG+
Sbjct:    2 KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117          
BLAST of DN618073 vs. ExPASy Swiss-Prot
Match: GBRL2_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Homo sapiens GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.872e-36
Identity = 69/116 (59.48%), Postives = 91/116 (78.45%), Query Frame = -1
Query:  191 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 538
            K  FK +H LE R  ESA+IR KYPDR+PVIVEK   + + DIDK+KYLVP+D++V QF++++RKRI+L +EKAIF+FV  T+P +   M  +YE+ KDEDGFLY+ YSGENTFG+
Sbjct:    2 KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117          
BLAST of DN618073 vs. ExPASy Swiss-Prot
Match: GBRL2_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Bos taurus GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.872e-36
Identity = 69/116 (59.48%), Postives = 91/116 (78.45%), Query Frame = -1
Query:  191 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 538
            K  FK +H LE R  ESA+IR KYPDR+PVIVEK   + + DIDK+KYLVP+D++V QF++++RKRI+L +EKAIF+FV  T+P +   M  +YE+ KDEDGFLY+ YSGENTFG+
Sbjct:    2 KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117          
BLAST of DN618073 vs. ExPASy Swiss-Prot
Match: GBRL1_PONAB (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Pongo abelii GN=GABARAPL1 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.510e-35
Identity = 67/115 (58.26%), Postives = 88/115 (76.52%), Query Frame = -1
Query:  194 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 538
            K  +K +HP E R  E  +IR+KYPDR+PVIVEKA K  VPD+DK+KYLVP+DL+VGQF +++RKRI L  E A+F FV NT+PPT A M  +YE+N++ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNREEDYFLYVAYSDESVYG 116          
BLAST of DN618073 vs. ExPASy Swiss-Prot
Match: GBRL1_XENTR (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus tropicalis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.591e-35
Identity = 67/115 (58.26%), Postives = 87/115 (75.65%), Query Frame = -1
Query:  194 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 538
            K  +K +HP E R  E  +IR+KYPDR+PVIVEKA K  VPD+DK+KYLVP+DL+VGQF +++RKRI L  E A+F FV NT+PPT A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of DN618073 vs. ExPASy Swiss-Prot
Match: GBRL1_XENLA (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus laevis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.591e-35
Identity = 67/115 (58.26%), Postives = 87/115 (75.65%), Query Frame = -1
Query:  194 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 538
            K  +K +HP E R  E  +IR+KYPDR+PVIVEKA K  VPD+DK+KYLVP+DL+VGQF +++RKRI L  E A+F FV NT+PPT A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of DN618073 vs. ExPASy Swiss-Prot
Match: GBRL1_RAT (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Rattus norvegicus GN=Gabarapl1 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.591e-35
Identity = 67/115 (58.26%), Postives = 87/115 (75.65%), Query Frame = -1
Query:  194 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 538
            K  +K +HP E R  E  +IR+KYPDR+PVIVEKA K  VPD+DK+KYLVP+DL+VGQF +++RKRI L  E A+F FV NT+PPT A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of DN618073 vs. ExPASy Swiss-Prot
Match: GBRL1_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Mus musculus GN=Gabarapl1 PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 5.591e-35
Identity = 67/115 (58.26%), Postives = 87/115 (75.65%), Query Frame = -1
Query:  194 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 538
            K  +K +HP E R  E  +IR+KYPDR+PVIVEKA K  VPD+DK+KYLVP+DL+VGQF +++RKRI L  E A+F FV NT+PPT A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of DN618073 vs. ExPASy Swiss-Prot
Match: GBRL1_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Homo sapiens GN=GABARAPL1 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.591e-35
Identity = 67/115 (58.26%), Postives = 87/115 (75.65%), Query Frame = -1
Query:  194 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 538
            K  +K +HP E R  E  +IR+KYPDR+PVIVEKA K  VPD+DK+KYLVP+DL+VGQF +++RKRI L  E A+F FV NT+PPT A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of DN618073 vs. ExPASy Swiss-Prot
Match: GBRL1_CAVPO (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Cavia porcellus GN=GABARAPL1 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.591e-35
Identity = 67/115 (58.26%), Postives = 87/115 (75.65%), Query Frame = -1
Query:  194 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 538
            K  +K +HP E R  E  +IR+KYPDR+PVIVEKA K  VPD+DK+KYLVP+DL+VGQF +++RKRI L  E A+F FV NT+PPT A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
The following BLAST results are available for this feature:
BLAST of DN618073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
GBRL2_MOUSE3.872e-3659.48Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_HUMAN3.872e-3659.48Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_BOVIN3.872e-3659.48Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_PONAB2.510e-3558.26Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_XENTR5.591e-3558.26Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_XENLA5.591e-3558.26Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_RAT5.591e-3558.26Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_MOUSE5.591e-3558.26Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_HUMAN5.591e-3558.26Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_CAVPO5.591e-3558.26Gamma-aminobutyric acid receptor-associated protei... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02B05_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618073 ID=DN618073; Name=DN618073; organism=Citrus sinensis; type=EST; length=568bp
GTTAACTTTCCTATCATCAACTGGATGCAATCAACCCAAAATAAAAACAA
TCATCAACTGATGCAATCAACCCCAAATAAAAACAAGATATCAGTGAACA
TGTCTGGGAATGGCTTAAAAGGGATCAACTGAGAATATACAACTTTCAAA
TTTTATGATACATGGCTTGTTGCCTTCGCTCTTAAAATGACCAACCGAAG
GTATTCTCTCCACTGTAAGTCATGTAAAGAAAACCATCTTCATCCTTGTT
TTCCTCATATATAGCAGACATCAAGGCACCGGTTGGAGGTAAAGTATTCT
TAACAAAAACAAATATGGCCTTTTCTGCACTGAGCTTAATCCTTTTACGG
ACAACATAAACAAATTGTCCCACAGATAAATCCGCTGGGACAAGGTATTT
TTTCTTGTCAATGTCAGGAACATCAGTCTTCTCAGCCTTCTCCACAATCA
CCGGAATCCTGTCAGGATACTTCTCTCTAATGCGAGCAGATTCTGCCAGC
CTCCTCTCCAATGGATGCTCGAGCTTGAATGAACTTTTGGGCATGGCGAA
ACTGACGCTACGATGACT
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