DN618073

Overview
NameDN618073
Unique NameDN618073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618073 vs. ExPASy Swiss-Prot
Match: ATG8H_ARATH (Autophagy-related protein 8h OS=Arabidopsis thaliana GN=ATG8H PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.147e-30
Identity = 62/113 (54.87%), Postives = 81/113 (71.68%), Query Frame = -1
Query:  194 SFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 532
            SFK +   + RL ES  I  KYPDRIPVI+EK    D+PD++K KYLVP D++VG F++++ KR++L   KA+FVFV NTLP T + M ++Y   K+EDGFLYM YS E TFG
Sbjct:    7 SFKDQFSSDERLKESNNIIAKYPDRIPVIIEKYSNADLPDMEKNKYLVPRDMTVGHFIHMLSKRMQLDPSKALFVFVHNTLPQTASRMDSLYNTFKEEDGFLYMCYSTEKTFG 119          
BLAST of DN618073 vs. ExPASy Swiss-Prot
Match: ATG8L_DICDI (Autophagy-related protein 8-like protein DDB_G0290491 OS=Dictyostelium discoideum GN=DDB_G0290491 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.073e-30
Identity = 64/122 (52.46%), Postives = 91/122 (74.59%), Query Frame = -1
Query:  194 AMPKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLS---AEKAIFVFV-KNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 547
            A+   SFK E+ LE+R   S++IR +Y DR+P+IVE+A  +DVPDI+KKK+L P+++ +  F+  +RK +  S    +KAIF+FV KN LPP+  L+S+IY+ +KDEDGFLY+ YSGENTFG
Sbjct:    2 ALLSKSFKQEYSLEKRKLISSKIRNRYKDRLPIIVERAANSDVPDINKKKFLAPSNMVITNFIMEIRKHLDDSDHNEQKAIFLFVNKNNLPPSSQLLSSIYDAHKDEDGFLYICYSGENTFG 123          
BLAST of DN618073 vs. ExPASy Swiss-Prot
Match: MLP3C_HUMAN (Microtubule-associated proteins 1A/1B light chain 3C OS=Homo sapiens GN=MAP1LC3C PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.979e-20
Identity = 51/114 (44.74%), Postives = 76/114 (66.67%), Query Frame = -1
Query:  194 FKLEHPLERRLAESARIREKYPDRIPVIVEK-AEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKN-TLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 529
            FK    L  R  E A IR K+P++IPV+VE+   +T +P +DK K+LVP +L++ QF+ ++R R+ L A +A ++ V N +L    A M+ IY + KDEDGF+YMTY+ + TFG
Sbjct:   13 FKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 126          
BLAST of DN618073 vs. ExPASy Swiss-Prot
Match: MLP3B_HUMAN (Microtubule-associated proteins 1A/1B light chain 3B OS=Homo sapiens GN=MAP1LC3B PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 7.336e-19
Identity = 46/118 (38.98%), Postives = 78/118 (66.10%), Query Frame = -1
Query:  194 KSSFKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVK-NTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 538
            + +FK     E+R+ +   IRE++P +IPVI+E  K EK  +P +DK K+LVP  +++ + + ++R+R++L+A +A F+ V  +++      +S +YE  KDEDGFLYM Y+ + TFG
Sbjct:    4 EKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120          
BLAST of DN618073 vs. ExPASy Swiss-Prot
Match: MLP3B_RAT (Microtubule-associated proteins 1A/1B light chain 3B OS=Rattus norvegicus GN=Map1lc3b PE=1 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 1.634e-18
Identity = 45/118 (38.14%), Postives = 78/118 (66.10%), Query Frame = -1
Query:  194 KSSFKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVK-NTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 538
            + +FK     E+R+ +   IRE++P +IPVI+E  K EK  +P +DK K+LVP  +++ + + ++R+R++L+A +A F+ V  +++      +S +YE  +DEDGFLYM Y+ + TFG
Sbjct:    4 EKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 120          
BLAST of DN618073 vs. ExPASy Swiss-Prot
Match: MLP3B_MOUSE (Microtubule-associated proteins 1A/1B light chain 3B OS=Mus musculus GN=Map1lc3b PE=1 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 1.634e-18
Identity = 45/118 (38.14%), Postives = 78/118 (66.10%), Query Frame = -1
Query:  194 KSSFKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVK-NTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 538
            + +FK     E+R+ +   IRE++P +IPVI+E  K EK  +P +DK K+LVP  +++ + + ++R+R++L+A +A F+ V  +++      +S +YE  +DEDGFLYM Y+ + TFG
Sbjct:    4 EKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 120          
BLAST of DN618073 vs. ExPASy Swiss-Prot
Match: MLP3B_BOVIN (Microtubule-associated proteins 1A/1B light chain 3B OS=Bos taurus GN=MAP1LC3B PE=1 SV=4)

HSP 1 Score: 91.6633 bits (226), Expect = 2.788e-18
Identity = 45/118 (38.14%), Postives = 77/118 (65.25%), Query Frame = -1
Query:  194 KSSFKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVK-NTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 538
            + +FK     E+R+ +   IRE++P +IPVI+E  K EK  +P +DK K+LVP  +++ + + ++R+R++L+A +A F+ V  +++      +  +YE  KDEDGFLYM Y+ + TFG
Sbjct:    4 EKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 120          
BLAST of DN618073 vs. ExPASy Swiss-Prot
Match: MP3B2_HUMAN (Microtubule-associated proteins 1A/1B light chain 3 beta 2 OS=Homo sapiens GN=MAP1LC3B2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.111e-18
Identity = 45/118 (38.14%), Postives = 77/118 (65.25%), Query Frame = -1
Query:  194 KSSFKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVK-NTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 538
            + +FK     E+R+ +   IRE++P +IPVI+E  K EK  +P +DK K+LVP  +++ + + ++R+R++L+A +A F+ V  +++      +S +YE  KDEDGFLYM  + + TFG
Sbjct:    4 EKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120          
BLAST of DN618073 vs. ExPASy Swiss-Prot
Match: MLP3A_BOVIN (Microtubule-associated proteins 1A/1B light chain 3A OS=Bos taurus GN=MAP1LC3A PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.059e-17
Identity = 46/116 (39.66%), Postives = 76/116 (65.52%), Query Frame = -1
Query:  191 FKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFV-KNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 529
            FK       R  E  +IRE++P +IPVI+E  K EK  +P +DK K+LVP  +++ + V ++R+R++L+  +A F+ V ++++      ++ IYE+ KDEDGFLYM Y+ + TFG+
Sbjct:    7 FKQRRSFADRCKEVQQIREQHPSKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121          
BLAST of DN618073 vs. ExPASy Swiss-Prot
Match: MLP3A_RAT (Microtubule-associated proteins 1A/1B light chain 3A OS=Rattus norvegicus GN=Map1lc3a PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.360e-17
Identity = 45/116 (38.79%), Postives = 76/116 (65.52%), Query Frame = -1
Query:  191 FKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFV-KNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 529
            FK       R  E  +IR+++P +IPVI+E  K EK  +P +DK K+LVP  +++ + V ++R+R++L+  +A F+ V ++++      ++ IYE+ KDEDGFLYM Y+ + TFG+
Sbjct:    7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121          
The following BLAST results are available for this feature:
BLAST of DN618073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ATG8H_ARATH4.147e-3054.87Autophagy-related protein 8h OS=Arabidopsis thalia... [more]
ATG8L_DICDI7.073e-3052.46Autophagy-related protein 8-like protein DDB_G0290... [more]
MLP3C_HUMAN2.979e-2044.74Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_HUMAN7.336e-1938.98Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_RAT1.634e-1838.14Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_MOUSE1.634e-1838.14Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_BOVIN2.788e-1838.14Microtubule-associated proteins 1A/1B light chain ... [more]
MP3B2_HUMAN8.111e-1838.14Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_BOVIN1.059e-1739.66Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_RAT2.360e-1738.79Microtubule-associated proteins 1A/1B light chain ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02B05_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618073 ID=DN618073; Name=DN618073; organism=Citrus sinensis; type=EST; length=568bp
GTTAACTTTCCTATCATCAACTGGATGCAATCAACCCAAAATAAAAACAA
TCATCAACTGATGCAATCAACCCCAAATAAAAACAAGATATCAGTGAACA
TGTCTGGGAATGGCTTAAAAGGGATCAACTGAGAATATACAACTTTCAAA
TTTTATGATACATGGCTTGTTGCCTTCGCTCTTAAAATGACCAACCGAAG
GTATTCTCTCCACTGTAAGTCATGTAAAGAAAACCATCTTCATCCTTGTT
TTCCTCATATATAGCAGACATCAAGGCACCGGTTGGAGGTAAAGTATTCT
TAACAAAAACAAATATGGCCTTTTCTGCACTGAGCTTAATCCTTTTACGG
ACAACATAAACAAATTGTCCCACAGATAAATCCGCTGGGACAAGGTATTT
TTTCTTGTCAATGTCAGGAACATCAGTCTTCTCAGCCTTCTCCACAATCA
CCGGAATCCTGTCAGGATACTTCTCTCTAATGCGAGCAGATTCTGCCAGC
CTCCTCTCCAATGGATGCTCGAGCTTGAATGAACTTTTGGGCATGGCGAA
ACTGACGCTACGATGACT
back to top