DN618068

Overview
NameDN618068
Unique NameDN618068
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length417
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL23_PONAB (60S ribosomal protein L23 OS=Pongo abelii GN=RPL23 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 5.080e-60
Identity = 110/129 (85.27%), Postives = 121/129 (93.80%), Query Frame = 1
Query:   31 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            MSKRGRGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKG+LNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLW
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGQLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLW 129          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL23_CANFA (60S ribosomal protein L23 OS=Canis familiaris GN=RPL23 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 5.080e-60
Identity = 111/129 (86.05%), Postives = 120/129 (93.02%), Query Frame = 1
Query:   31 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            MSKRGRGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLW
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPXLRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVXKECADLW 129          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL23_AEDAE (60S ribosomal protein L23 OS=Aedes aegypti GN=RpL23-A PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 8.665e-60
Identity = 107/129 (82.95%), Postives = 121/129 (93.80%), Query Frame = 1
Query:   31 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            MSKRGRGGSAG KFR+SLGLPV A +NCADNTGAKNLY+I+V GI+GRLNRLP+A VGDM +ATVKKGKP+LRKKVMPAV++RQRKP+RR+DGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLW
Sbjct:    1 MSKRGRGGSAGGKFRISLGLPVGAVINCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLW 129          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL23_DROME (60S ribosomal protein L23 OS=Drosophila melanogaster GN=RpL23 PE=1 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 4.300e-59
Identity = 106/129 (82.17%), Postives = 121/129 (93.80%), Query Frame = 1
Query:   31 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            MSKRGRGG+AG KFR+SLGLPV A +NCADNTGAKNLY+I+V GI+GRLNRLP+A VGDM +ATVKKGKP+LRKKVMPAV++RQRKP+RR+DGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLW
Sbjct:    1 MSKRGRGGTAGGKFRISLGLPVGAVMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLW 129          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL23_SCHPO (60S ribosomal protein L23 OS=Schizosaccharomyces pombe GN=rpl23a PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 5.812e-56
Identity = 99/126 (78.57%), Postives = 114/126 (90.48%), Query Frame = 1
Query:   40 RGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            RGRG ++G K+RM+LGLPV A +NCADN+GAKNLYI+SV G   RLNRLP+A  GDMV+ATVKKGKPDLRKK+MPA++VRQRK WRRKDGV++YFEDNAGVIVNPKGEMKGSAITGP+ KECADLW
Sbjct:    3 RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLW 128          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL23_CAEEL (60S ribosomal protein L23 OS=Caenorhabditis elegans GN=rpl-23 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 6.426e-55
Identity = 100/129 (77.52%), Postives = 116/129 (89.92%), Query Frame = 1
Query:   31 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            MSKRGRGG++G KFR+SLGLPV A +NCADNTGAKNL++ISV GI+GRLNRLPSA VGDM + +VKKGKP+LRKKV+  V++RQRK +RRKDG F+YFEDNAGVIVN KGEMKGSAITGP+ KECADLW
Sbjct:    1 MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLW 129          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL23_YEAST (60S ribosomal protein L23 OS=Saccharomyces cerevisiae GN=RPL23A PE=1 SV=3)

HSP 1 Score: 209.92 bits (533), Expect = 3.189e-54
Identity = 97/122 (79.51%), Postives = 111/122 (90.98%), Query Frame = 1
Query:   52 GSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            G+ G KFR+SLGLPV A +NCADN+GA+NLYII+VKG   RLNRLP+A +GDMVMATVKKGKP+LRKKVMPA++VRQ K WRR+DGVF+YFEDNAGVI NPKGEMKGSAITGP+GKECADLW
Sbjct:    5 GAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADLW 126          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL23_BRUMA (60S ribosomal protein L23 OS=Brugia malayi GN=RPL23 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 5.440e-54
Identity = 101/129 (78.29%), Postives = 116/129 (89.92%), Query Frame = 1
Query:   31 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            MSKRGRGG++G KFR+SLGLPV A +NCADNTGAKNL++I+V GIKGRLNRLPSA VGDM +A+VKKGKP+LRKKV+ AV+VRQRK +RR DG  +YFEDNAGVIVN KGEMKGSAITGP+ KECADLW
Sbjct:    1 MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVIAVSGIKGRLNRLPSAGVGDMFVASVKKGKPELRKKVLQAVVVRQRKQYRRIDGSSIYFEDNAGVIVNNKGEMKGSAITGPVTKECADLW 129          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL23_DICDI (60S ribosomal protein L23 OS=Dictyostelium discoideum GN=rpl23 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.298e-47
Identity = 88/121 (72.73%), Postives = 107/121 (88.43%), Query Frame = 1
Query:   55 SAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            + G+ +R+SLGLPV A +N ADN+GAKNLY+I+VKGIKGRLNRLPSA VGDMVMATVKKGKP+LRKKV   ++VRQRK W+RKDGV++YFEDNAGV+ NPKGE+KG+ I GP+ KEC+DLW
Sbjct:    6 AVGSNYRVSLGLPVGAVMNSADNSGAKNLYVIAVKGIKGRLNRLPSAGVGDMVMATVKKGKPELRKKVCTGLVVRQRKHWKRKDGVYIYFEDNAGVMCNPKGEVKGN-ILGPVAKECSDLW 125          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL23_TRYCR (60S ribosomal protein L23 OS=Trypanosoma cruzi GN=RPL23 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.096e-41
Identity = 82/115 (71.30%), Postives = 97/115 (84.35%), Query Frame = 1
Query:   61 GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKG-EMKGSAITGPIGKE 402
            G +FR+SL LPV A VNCADNTGAKNLYIISVKG  GRLNRLP+A +GD+VMA+VKKGKP+LR+KV+ AVI+RQRK WRRKDG  +YFEDNAGVIVN +G + + S I GP+ KE
Sbjct:   10 GCRFRVSLALPVGAVVNCADNTGAKNLYIISVKGYHGRLNRLPAAALGDIVMASVKKGKPELRRKVLNAVIIRQRKSWRRKDGTVIYFEDNAGVIVNSQGRDGRVSGIAGPVAKE 124          
The following BLAST results are available for this feature:
BLAST of DN618068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 491
Match NameE-valueIdentityDescription
RL23_PONAB5.080e-6085.2760S ribosomal protein L23 OS=Pongo abelii GN=RPL23... [more]
RL23_CANFA5.080e-6086.0560S ribosomal protein L23 OS=Canis familiaris GN=R... [more]
RL23_AEDAE8.665e-6082.9560S ribosomal protein L23 OS=Aedes aegypti GN=RpL2... [more]
RL23_DROME4.300e-5982.1760S ribosomal protein L23 OS=Drosophila melanogast... [more]
RL23_SCHPO5.812e-5678.5760S ribosomal protein L23 OS=Schizosaccharomyces p... [more]
RL23_CAEEL6.426e-5577.5260S ribosomal protein L23 OS=Caenorhabditis elegan... [more]
RL23_YEAST3.189e-5479.5160S ribosomal protein L23 OS=Saccharomyces cerevis... [more]
RL23_BRUMA5.440e-5478.2960S ribosomal protein L23 OS=Brugia malayi GN=RPL2... [more]
RL23_DICDI1.298e-4772.7360S ribosomal protein L23 OS=Dictyostelium discoid... [more]
RL23_TRYCR3.096e-4171.3060S ribosomal protein L23 OS=Trypanosoma cruzi GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02B02_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618068 ID=DN618068; Name=DN618068; organism=Citrus sinensis; type=EST; length=417bp
TCGCTATTGCTGTCACCTTTAGCTGCGAAAATGTCGAAGCGAGGACGTGG
AGGATCAGCAGGTAACAAGTTCAGGATGTCACTGGGTTTGCCAGTGGCAG
CAACTGTGAACTGTGCTGACAACACTGGGGCAAAGAACCTTTACATCATC
TCAGTTAAGGGAATCAAAGGTCGCCTCAACCGTTTGCCGTCTGCCTGTGT
TGGAGACATGGTTATGGCTACCGTGAAGAAAGGGAAGCCTGATCTTAGGA
AGAAGGTGATGCCCGCCGTCATTGTAAGGCAGCGCAAGCCATGGCGCAGA
AAGGATGGTGTCTTCATGTACTTTGAAGATAATGCTGGTGTTATTGTGAA
TCCAAAGGGAGAAATGAAGGGTTCTGCCATCACCGGTCCAATTGGTAAAG
AGTGTGCTGATTTGTGG
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