DN618068

Overview
NameDN618068
Unique NameDN618068
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length417
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL14_STAMF (50S ribosomal protein L14P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.819e-33
Identity = 70/129 (54.26%), Postives = 94/129 (72.87%), Query Frame = 1
Query:   31 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            M K+G+G  A ++ R++ GL V + V  ADN+GAK + II V G KGRL R+P A +GD+V+ TVKKG P++RK+V+ AVIVRQ++P+RR DG ++ FEDNA  IV P+G  KGS I GPI KE A+ W
Sbjct:    1 MPKKGKGKPAFSRRRIATGLQVGSYVRVADNSGAKLVKIIGVPGYKGRLRRIPPAGIGDLVVVTVKKGTPEMRKQVVKAVIVRQKRPFRRPDGTWVAFEDNAVAIVTPEGTPKGSEIRGPIAKEVAERW 129          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL23_ENCCU (60S ribosomal protein L23 OS=Encephalitozoon cuniculi GN=RPL23 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.540e-32
Identity = 62/117 (52.99%), Postives = 88/117 (75.21%), Query Frame = 1
Query:   67 KFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            +++M+ G+ V   + CADN+GAK L  I VK  +GRLNRLP+A  GD+ + +VKKGKP+LRKKV  A+++RQ+K WRR DG  + FEDNA V++N KGE++G+ I GP+ +E AD+W
Sbjct:   19 RYKMTRGIQVETLMKCADNSGAKILRCIGVKRYRGRLNRLPAAAPGDICVVSVKKGKPELRKKVHYAILIRQKKIWRRTDGSHIMFEDNAAVLINNKGELRGAQIAGPVPREVADMW 135          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL14_THEAC (50S ribosomal protein L14P OS=Thermoplasma acidophilum GN=rpl14p PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.431e-32
Identity = 60/115 (52.17%), Postives = 86/115 (74.78%), Query Frame = 1
Query:   73 RMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            R + GLP+ A + CADNTGA+++ +I VK   G+  R+P+A VGDM MA+VKKG P++R KV+ AV++RQ++P+RR DG  + FEDNA V+V P GE++GS I GP+ +E A+ W
Sbjct:    7 RQTRGLPLGANITCADNTGARSISLIDVKAWHGKARRIPAAGVGDMFMASVKKGTPEMRSKVVYAVVIRQKRPYRRPDGTMVQFEDNAAVLVTPDGEVRGSEIKGPVAREAAERW 121          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL14_HYPBU (50S ribosomal protein L14P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.852e-32
Identity = 67/126 (53.17%), Postives = 90/126 (71.43%), Query Frame = 1
Query:   40 RGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            +G  G AG +  ++ GL V + V  ADN+GAK   II V G KGRL R+P A VGDMV+ TVKKG P++RK+V+ A+++RQR+P+RR DG ++ FEDNA VIV+P G  KGS I GP+ +E A+ W
Sbjct:    3 KGAAG-AGPRRHIAAGLQVGSYVKVADNSGAKEAMIIGVIGYKGRLRRIPPAAVGDMVVVTVKKGTPEMRKQVVRAIVIRQRRPYRRPDGTWIAFEDNAVVIVSPDGTPKGSEIRGPVAREAAERW 127          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL14_THEVO (50S ribosomal protein L14P OS=Thermoplasma volcanium GN=rpl14p PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 9.983e-32
Identity = 62/122 (50.82%), Postives = 89/122 (72.95%), Query Frame = 1
Query:   52 GSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            G AG + R   GLP+ A + CADNTGA+++ +I VK   G+  R+P+A VGDM +A+VKKG P++R KV+ AV++RQ++P+RR DG  + FEDNA V+V P GE++GS I GP+ +E A+ W
Sbjct:    3 GIAGREIR---GLPLGANIVCADNTGARSISLIDVKAYHGKARRIPAAGVGDMFIASVKKGTPEMRSKVVYAVVIRQKRPYRRPDGTMVEFEDNAAVLVTPDGEVRGSEIKGPVAREAAERW 121          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL14_AERPE (50S ribosomal protein L14P OS=Aeropyrum pernix GN=rpl14p PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.224e-31
Identity = 66/129 (51.16%), Postives = 94/129 (72.87%), Query Frame = 1
Query:   31 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            M+K+ + G   +++ ++ GL V + V  ADN+GAK + IISV  +K RL RLPSA VGD+V+ +VKKG P +R++V+ AV+VRQR+P+RR DG ++ FEDNA VIVNP G  +GS + GPI +E A+ W
Sbjct:    1 MAKKKKYGVVVSRYGVNTGLQVGSYVPVADNSGAKEVMIISVPQVKTRLRRLPSAGVGDLVVVSVKKGTPQMRRQVVYAVVVRQRRPFRRPDGTWVSFEDNAVVIVNPDGTPRGSEVRGPIAREAAERW 129          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL14_METKA (50S ribosomal protein L14P OS=Methanopyrus kandleri GN=rpl14p PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.905e-31
Identity = 66/110 (60.00%), Postives = 82/110 (74.55%), Query Frame = 1
Query:   88 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            LPV A + CADNTGA+ L II+VKG KG   RLP+A +GDMV+ +VK+G PD+RK+V+ AVIVRQRK +RR DG  + FEDNA VIV P G  +GS I GP+ KE A+ W
Sbjct:   13 LPVGARLVCADNTGARELQIIAVKGYKGVRRRLPNAGIGDMVVCSVKEGTPDMRKEVVNAVIVRQRKEYRRPDGTRVKFEDNAAVIVTPDGAPRGSEIRGPVAKEAAERW 122          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL14_METTH (50S ribosomal protein L14P OS=Methanobacterium thermoautotrophicum GN=rpl14p PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.442e-30
Identity = 64/115 (55.65%), Postives = 86/115 (74.78%), Query Frame = 1
Query:   73 RMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            +++  LPV A + C DNTGA+ + IISV+G KG   RL +A VGDMV+ +VKKG  D+R++V+ AVIVRQ+K +RR DG+ + FEDNA VIV+P+G +KGS I GP+ KE AD W
Sbjct:    7 KVTRALPVGARLQCVDNTGAREVEIISVRGYKGVRRRLAAAGVGDMVVVSVKKGTVDMRREVLNAVIVRQKKEYRRPDGLRVKFEDNAAVIVSPEGVLKGSEIRGPVAKEAADRW 121          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL14_METST (50S ribosomal protein L14P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.459e-30
Identity = 65/114 (57.02%), Postives = 82/114 (71.93%), Query Frame = 1
Query:   76 MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            +S  LP+ A + C DNTGA+ + IISVKG KG   RL SA VGDMV+ +VKKG  D+R++V  AV+VRQ+K +RR DG+ + FEDNA VI+   G +KGS I GPI KE ADLW
Sbjct:    8 VSKSLPIGARLKCIDNTGAREVEIISVKGFKGVRRRLASAGVGDMVVISVKKGTADMRREVTTAVVVRQKKEYRRADGLRVKFEDNAAVIITEDGVLKGSEIRGPIAKEAADLW 121          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL14_METS3 (50S ribosomal protein L14P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.459e-30
Identity = 61/114 (53.51%), Postives = 84/114 (73.68%), Query Frame = 1
Query:   76 MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            +S  LP+ AT+ C DNTGA+ + IISVKG KG   RL  A VGD+V+A+VKKG  D+R++V+ AV++RQ+K + R DG+ + FEDNA VI+ P+G +KGS + GP+ KE AD W
Sbjct:    8 VSKALPIGATLQCVDNTGAREIQIISVKGFKGVRRRLDVAGVGDLVVASVKKGTADMRREVVNAVVIRQKKEYMRADGLRVKFEDNAAVIITPEGILKGSEVRGPVAKEAADRW 121          
The following BLAST results are available for this feature:
BLAST of DN618068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 491
Match NameE-valueIdentityDescription
RL14_STAMF1.819e-3354.2650S ribosomal protein L14P OS=Staphylothermus mari... [more]
RL23_ENCCU1.540e-3252.9960S ribosomal protein L23 OS=Encephalitozoon cunic... [more]
RL14_THEAC3.431e-3252.1750S ribosomal protein L14P OS=Thermoplasma acidoph... [more]
RL14_HYPBU5.852e-3253.1750S ribosomal protein L14P OS=Hyperthermus butylic... [more]
RL14_THEVO9.983e-3250.8250S ribosomal protein L14P OS=Thermoplasma volcani... [more]
RL14_AERPE2.224e-3151.1650S ribosomal protein L14P OS=Aeropyrum pernix GN=... [more]
RL14_METKA2.905e-3160.0050S ribosomal protein L14P OS=Methanopyrus kandler... [more]
RL14_METTH1.442e-3055.6550S ribosomal protein L14P OS=Methanobacterium the... [more]
RL14_METST2.459e-3057.0250S ribosomal protein L14P OS=Methanosphaera stadt... [more]
RL14_METS32.459e-3053.5150S ribosomal protein L14P OS=Methanobrevibacter s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02B02_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618068 ID=DN618068; Name=DN618068; organism=Citrus sinensis; type=EST; length=417bp
TCGCTATTGCTGTCACCTTTAGCTGCGAAAATGTCGAAGCGAGGACGTGG
AGGATCAGCAGGTAACAAGTTCAGGATGTCACTGGGTTTGCCAGTGGCAG
CAACTGTGAACTGTGCTGACAACACTGGGGCAAAGAACCTTTACATCATC
TCAGTTAAGGGAATCAAAGGTCGCCTCAACCGTTTGCCGTCTGCCTGTGT
TGGAGACATGGTTATGGCTACCGTGAAGAAAGGGAAGCCTGATCTTAGGA
AGAAGGTGATGCCCGCCGTCATTGTAAGGCAGCGCAAGCCATGGCGCAGA
AAGGATGGTGTCTTCATGTACTTTGAAGATAATGCTGGTGTTATTGTGAA
TCCAAAGGGAGAAATGAAGGGTTCTGCCATCACCGGTCCAATTGGTAAAG
AGTGTGCTGATTTGTGG
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