DN618068

Overview
NameDN618068
Unique NameDN618068
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length417
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL14_METM6 (50S ribosomal protein L14P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.719e-29
Identity = 60/110 (54.55%), Postives = 79/110 (71.82%), Query Frame = 1
Query:   88 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            LP  A + CADNTGAK L +I+VK   G + RLP+  VG MV  +VKKG P++RK+V+PA+I+RQ+K ++R DG  + FEDNA VIV P+G  KGS I GP+ KE A+ W
Sbjct:   12 LPNGARLVCADNTGAKELEVIAVKNYTGTVRRLPAGGVGHMVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIVTPEGTPKGSEIKGPVSKEAAERW 121          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL14_METM5 (50S ribosomal protein L14P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.551e-29
Identity = 60/110 (54.55%), Postives = 79/110 (71.82%), Query Frame = 1
Query:   88 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            LP  A + CADNTGAK L +I+VK   G + RLP+  VG MV  +VKKG P++RK+V+PA+I+RQ+K ++R DG  + FEDNA VIV P+G  KGS I GP+ KE A+ W
Sbjct:   12 LPNGARLVCADNTGAKELEVIAVKNYVGTVRRLPAGGVGHMVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIVTPEGTPKGSEIKGPVSKEAAERW 121          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL14_PYRHO (50S ribosomal protein L14P OS=Pyrococcus horikoshii GN=rpl14p PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 6.056e-29
Identity = 64/130 (49.23%), Postives = 90/130 (69.23%), Query Frame = 1
Query:   31 MSKRGRGGSAG-NKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            M+K+G G + G +  R +  +P+ A +  ADN+GAK + +I V    G   RL SA VGDMV+ATVKKG+PD+R +V+ AVI+RQRK +RR DG+ + FEDNA VIV P+G  +G+ I GP+ +E A+ W
Sbjct:    1 MAKKGAGATRGISPVRPTRAIPIGAYLTVADNSGAKVIQVIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIRQRKEYRRLDGMRVKFEDNAAVIVTPEGVPRGTEIRGPVAREAAEKW 130          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL14_PYRAB (50S ribosomal protein L14P OS=Pyrococcus abyssi GN=rpl14p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.056e-29
Identity = 65/130 (50.00%), Postives = 89/130 (68.46%), Query Frame = 1
Query:   31 MSKRGRGGSAG-NKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            M+K+G G + G    R +  +PV A +  ADN+GAK + +I V    G   RL SA VGDMV+ATVKKG+PD+R +V+ AVI+RQRK +RR DG+ + FEDNA VIV P+G  +G+ I GP+ +E A+ W
Sbjct:    1 MAKKGAGATRGITPVRPTRAIPVGAYLTVADNSGAKVIQVIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIRQRKEYRRLDGMRIKFEDNAAVIVTPEGVPRGTEIRGPVAREAAERW 130          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL14_CENSY (50S ribosomal protein L14P OS=Cenarchaeum symbiosum GN=rpl14p PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.127e-28
Identity = 67/129 (51.94%), Postives = 88/129 (68.22%), Query Frame = 1
Query:   40 RGRGGSAG-NKFR--MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            R RG + G  +FR  ++  LPV A V CADN+GAK L II V+  K R++RLP+A VGD V   VKKG  +LRK+V  AVI+RQ+ P RR +GV + FEDNA V+  P+GEMKG+ I GP+  E ++ W
Sbjct:    5 RSRGKAKGVEEFRPYVTRALPVGARVTCADNSGAKVLEIIMVQKAKTRVSRLPAAAVGDYVNVVVKKGPAELRKQVHGAVIIRQKYPVRRLNGVRVAFEDNAAVLTTPEGEMKGTDIKGPVAAEASEKW 133          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL14_SULTO (50S ribosomal protein L14P OS=Sulfolobus tokodaii GN=rpl14p PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.696e-28
Identity = 62/119 (52.10%), Postives = 81/119 (68.07%), Query Frame = 1
Query:   61 GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            G++  ++ GL    TV  ADN+GAK   II + G KG L R+P A + D+VM +V+KG P++RK+   AVIVRQR P+RR DG ++ FEDNA VIVNP G  KG+ I GPI KE A+ W
Sbjct:   12 GSRKGLTPGLQHYTTVTVADNSGAKEAVIIGIYGYKGVLRRIPFANIADLVMVSVRKGTPEVRKQKFKAVIVRQRMPFRRPDGTWIAFEDNAVVIVNPDGTPKGTEIRGPIAKEAAERW 130          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL14_ARCFU (50S ribosomal protein L14P OS=Archaeoglobus fulgidus GN=rpl14p PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.745e-28
Identity = 62/108 (57.41%), Postives = 78/108 (72.22%), Query Frame = 1
Query:   88 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 411
            LP  A + CADNTGA+ L II+VKG KG   R P+A VGD+V+ TVKKG P++RK+V  AVIVRQRK +RR DG  + FEDNA VI N +GE +GS I G + +E A+
Sbjct:   12 LPTGARLVCADNTGARELEIIAVKGYKGVRRRYPAAGVGDIVVVTVKKGTPEIRKQVHYAVIVRQRKEYRRPDGTRVKFEDNAAVITNERGEPRGSEIRGAVAREAAE 119          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL14_IGNH4 (50S ribosomal protein L14P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.492e-27
Identity = 62/123 (50.41%), Postives = 83/123 (67.48%), Query Frame = 1
Query:   55 SAGNKFRMSL--GLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            ++ NK R  +  GL V + V   DN+GAK   II V G  GRL R+P A VGDMV+ TVKKG P++R +V+ A++VRQRKP+RR DG ++ FEDNA VIV+  G  +GS I GP+ +E  + W
Sbjct:    4 ASANKSRRKVVTGLQVGSYVKVTDNSGAKVAMIIGVPGYHGRLRRIPPAGVGDMVVVTVKKGTPEMRHQVVRAIVVRQRKPFRRPDGTWVAFEDNAVVIVSEDGTPRGSEIRGPVAREAVERW 126          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL14_METS5 (50S ribosomal protein L14P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.544e-27
Identity = 57/104 (54.81%), Postives = 76/104 (73.08%), Query Frame = 1
Query:  106 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            VN +DN+GAK   IISV G +G L R+P A VGD+VM +V+KG PD+RK+   AV++RQR P+RR DG ++ F+DNA VIVNP G  KG+ I GP+ +E A+ W
Sbjct:   24 VNVSDNSGAKEAMIISVFGYRGALRRVPYANVGDLVMVSVRKGAPDVRKQKFKAVVIRQRMPFRRPDGTWISFDDNAVVIVNPDGTAKGTEIRGPVAREAAERW 127          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL14_METTP (50S ribosomal protein L14P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.403e-27
Identity = 56/117 (47.86%), Postives = 81/117 (69.23%), Query Frame = 1
Query:   61 GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 411
            GNK ++   +     + CADNTGA+ L+++SVK  +G  NR P A +GDMV+ +VKKG P++RK++  AVI+RQ+K +RR DG+ + FEDNA VI +  G  KGS I GP+ +E A+
Sbjct:    3 GNKAKIPRSINTGTYLECADNTGARTLFVVSVKKYRGVKNRQPCAGIGDMVVVSVKKGTPEMRKQIFNAVIIRQKKEFRRPDGLRVKFEDNAAVITDDAGVPKGSEIKGPVAREVAE 119          
The following BLAST results are available for this feature:
BLAST of DN618068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 491
Match NameE-valueIdentityDescription
RL14_METM62.719e-2954.5550S ribosomal protein L14P OS=Methanococcus maripa... [more]
RL14_METM53.551e-2954.5550S ribosomal protein L14P OS=Methanococcus maripa... [more]
RL14_PYRHO6.056e-2949.2350S ribosomal protein L14P OS=Pyrococcus horikoshi... [more]
RL14_PYRAB6.056e-2950.0050S ribosomal protein L14P OS=Pyrococcus abyssi GN... [more]
RL14_CENSY5.127e-2851.9450S ribosomal protein L14P OS=Cenarchaeum symbiosu... [more]
RL14_SULTO6.696e-2852.1050S ribosomal protein L14P OS=Sulfolobus tokodaii ... [more]
RL14_ARCFU8.745e-2857.4150S ribosomal protein L14P OS=Archaeoglobus fulgid... [more]
RL14_IGNH41.492e-2750.4150S ribosomal protein L14P OS=Ignicoccus hospitali... [more]
RL14_METS52.544e-2754.8150S ribosomal protein L14P OS=Metallosphaera sedul... [more]
RL14_METTP7.403e-2747.8650S ribosomal protein L14P OS=Methanosaeta thermop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02B02_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618068 ID=DN618068; Name=DN618068; organism=Citrus sinensis; type=EST; length=417bp
TCGCTATTGCTGTCACCTTTAGCTGCGAAAATGTCGAAGCGAGGACGTGG
AGGATCAGCAGGTAACAAGTTCAGGATGTCACTGGGTTTGCCAGTGGCAG
CAACTGTGAACTGTGCTGACAACACTGGGGCAAAGAACCTTTACATCATC
TCAGTTAAGGGAATCAAAGGTCGCCTCAACCGTTTGCCGTCTGCCTGTGT
TGGAGACATGGTTATGGCTACCGTGAAGAAAGGGAAGCCTGATCTTAGGA
AGAAGGTGATGCCCGCCGTCATTGTAAGGCAGCGCAAGCCATGGCGCAGA
AAGGATGGTGTCTTCATGTACTTTGAAGATAATGCTGGTGTTATTGTGAA
TCCAAAGGGAGAAATGAAGGGTTCTGCCATCACCGGTCCAATTGGTAAAG
AGTGTGCTGATTTGTGG
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