DN618068

Overview
NameDN618068
Unique NameDN618068
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length417
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL14_THEPD (50S ribosomal protein L14P OS=Thermofilum pendens (strain Hrk 5) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.263e-26
Identity = 60/131 (45.80%), Postives = 89/131 (67.94%), Query Frame = 1
Query:   31 MSKRGRGGSAGNKFRMSL--GLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            M+KRG   + G  +R+ L  G+ + + V  ADN+GA    +I V   K    R+P A VGD+V+ +++ GKP+LRK+VM A+++RQR+P+RR DG ++ FEDNA VI+ P+GE KG+ I GP+ KE A+ W
Sbjct:    1 MAKRGPK-TVGVSYRLGLTPGVFMESLVKVADNSGATLAKVIGVPHYKAVWRRIPGAAVGDIVIVSIRAGKPELRKQVMRAIVIRQRRPYRRPDGSWIAFEDNAVVIITPEGEPKGTEIRGPLAKEAAERW 130          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL14_SULSO (50S ribosomal protein L14P OS=Sulfolobus solfataricus GN=rpl14p PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.263e-26
Identity = 58/119 (48.74%), Postives = 80/119 (67.23%), Query Frame = 1
Query:   61 GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            G++  ++  L   + VN ADN+G K   II V G +G L R+P A + DMVM ++KKG P++RK+   AVIVRQR P+RR DG ++ FEDNA VI+NP G  KG+ + GPI +E A+ W
Sbjct:    9 GSRKGLTPALQHYSVVNVADNSGGKEAMIIGVYGYRGVLRRVPFANIADMVMVSIKKGTPEVRKQKFRAVIVRQRMPYRRPDGTWISFEDNAVVIINPDGTPKGTEVRGPIAREAAERW 127          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL14_HALSA (50S ribosomal protein L14P OS=Halobacterium salinarium GN=rpl14p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.267e-26
Identity = 57/115 (49.57%), Postives = 79/115 (68.70%), Query Frame = 1
Query:   67 KFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 411
            K  ++ GL   + + CADNTGA+ L I SV G +GR NR P A +GD +  +V KG P++R++V+ AV+VRQRKP RR DG  + FEDNA VI++  GE +G+ I GPI +E A+
Sbjct:    5 KADITQGLEKGSLITCADNTGARELKITSVMGYQGRKNRHPKAGLGDTITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIIDDLGEPRGTEIKGPISREVAE 119          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL14_HALS3 (50S ribosomal protein L14P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.267e-26
Identity = 57/115 (49.57%), Postives = 79/115 (68.70%), Query Frame = 1
Query:   67 KFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 411
            K  ++ GL   + + CADNTGA+ L I SV G +GR NR P A +GD +  +V KG P++R++V+ AV+VRQRKP RR DG  + FEDNA VI++  GE +G+ I GPI +E A+
Sbjct:    5 KADITQGLEKGSLITCADNTGARELKITSVMGYQGRKNRHPKAGLGDTITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIIDDLGEPRGTEIKGPISREVAE 119          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL14_SULAC (50S ribosomal protein L14P OS=Sulfolobus acidocaldarius GN=rpl14p PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.185e-26
Identity = 55/106 (51.89%), Postives = 75/106 (70.75%), Query Frame = 1
Query:  100 ATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            ++V  ADN+GAK   II + G +G L R+P A + D+VM +V+KG PD+RK+   AVIVRQR P+RR DG ++ FEDNA VI+NP G  KG+ + GPI +E A+ W
Sbjct:   22 SSVVVADNSGAKEAVIIGIYGYRGVLRRVPFANIADLVMVSVRKGSPDVRKQKFKAVIVRQRMPFRRPDGTWISFEDNAVVIINPDGTPKGTEVRGPIAREAAERW 127          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL14_METBU (50S ribosomal protein L14P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.069e-25
Identity = 56/117 (47.86%), Postives = 81/117 (69.23%), Query Frame = 1
Query:   61 GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 411
            G + ++   L   A + C DNTGA+ + IISVK  +G  NR+P   +GDM + +VKKG P++RK+++ AVIVRQ+K +RR DG+ + FEDNA VIV+ KG  KG+ I GP+ +E A+
Sbjct:    3 GIRSKIPRALNAGAKIECVDNTGARTVEIISVKKYRGVKNRMPKGGIGDMCVVSVKKGTPEMRKQILYAVIVRQKKEFRRPDGIRVAFEDNAVVIVDDKGIPKGTDIKGPVAREAAE 119          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL14_CALMQ (50S ribosomal protein L14P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.396e-25
Identity = 59/133 (44.36%), Postives = 90/133 (67.67%), Query Frame = 1
Query:   31 MSKRGRGGSAGNKFRMSL--GLPVAATVNCADNTGAKNLYIISVKG--IKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            M+KRG   + G  +R  L  G+ + + VN ADN+GAK + +I V G   K    R+P   VGDMV+ +V++GKP++RK+++ A++VRQR+P+RR DG ++ FEDNA VIV  +G++KG+ + GP+  E A  W
Sbjct:    1 MAKRGGPRTVGVPWRFHLTPGIFMNSLVNVADNSGAKVVKVIGVVGHYSKNVHRRIPGVSVGDMVVVSVQEGKPEMRKQILRAIVVRQRRPFRRPDGTWVAFEDNAVVIVTEEGQVKGTEVHGPVAMEAAQRW 133          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL14_NITMS (50S ribosomal protein L14P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.110e-25
Identity = 56/110 (50.91%), Postives = 76/110 (69.09%), Query Frame = 1
Query:   88 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            +PV A + CADN+GAK L +I+V   + R +RLPSA VGD     VKKG  +LRK+V  AVI+RQ+ P RR +GV + FEDNA V++ P+GE KG+ I GP+  E ++ W
Sbjct:   20 IPVGANIVCADNSGAKILEVINVPRHRTRASRLPSASVGDFCNVVVKKGPAELRKQVYGAVIIRQKYPVRRLNGVRVCFEDNAAVLITPEGETKGTDIKGPVAAEASEKW 129          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL14_PYRCJ (50S ribosomal protein L14P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.062e-25
Identity = 61/133 (45.86%), Postives = 88/133 (66.17%), Query Frame = 1
Query:   31 MSKRGRGGSAG--NKFRMSLGLPVAATVNCADNTGAKNLYIISVKG--IKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            M+KRG   + G   +F ++ G+ + + V  ADN+GAK + +I V G   K    R+P A VGDMV+  V++GKP+LRK++  A++VRQR+P+RR DG ++ FEDNA VIV P+G+ KGS I GP+  E    W
Sbjct:    1 MAKRGGKRTVGVPYRFHVTPGIFMNSLVPVADNSGAKLVRVIGVVGHYSKSVHRRIPGAGVGDMVVVVVREGKPELRKQIFRAIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPVAMEATLRW 133          
BLAST of DN618068 vs. ExPASy Swiss-Prot
Match: RL14_PYRAE (50S ribosomal protein L14P OS=Pyrobaculum aerophilum GN=rpl14p PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.306e-25
Identity = 60/133 (45.11%), Postives = 88/133 (66.17%), Query Frame = 1
Query:   31 MSKRGRGGSAG--NKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRL--NRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLW 417
            M+KRG   + G   +F ++ G+ + + V  ADN+GAK + +I V G   +    R+P A VGDMV+  V++GKP+LRK++  A++VRQR+P+RR DG ++ FEDNA VIV P+G+ KGS I GP+  E    W
Sbjct:    1 MAKRGGKRTVGVPYRFHVTPGIFMNSLVPVADNSGAKLVRVIGVVGHYSKTVHRRIPGAGVGDMVVVVVREGKPELRKQIFRAIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPVAMEATLRW 133          
The following BLAST results are available for this feature:
BLAST of DN618068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 491
Match NameE-valueIdentityDescription
RL14_THEPD1.263e-2645.8050S ribosomal protein L14P OS=Thermofilum pendens ... [more]
RL14_SULSO1.263e-2648.7450S ribosomal protein L14P OS=Sulfolobus solfatari... [more]
RL14_HALSA6.267e-2649.5750S ribosomal protein L14P OS=Halobacterium salina... [more]
RL14_HALS36.267e-2649.5750S ribosomal protein L14P OS=Halobacterium salina... [more]
RL14_SULAC8.185e-2651.8950S ribosomal protein L14P OS=Sulfolobus acidocald... [more]
RL14_METBU1.069e-2547.8650S ribosomal protein L14P OS=Methanococcoides bur... [more]
RL14_CALMQ1.396e-2544.3650S ribosomal protein L14P OS=Caldivirga maquiling... [more]
RL14_NITMS3.110e-2550.9150S ribosomal protein L14P OS=Nitrosopumilus marit... [more]
RL14_PYRCJ4.062e-2545.8650S ribosomal protein L14P OS=Pyrobaculum calidifo... [more]
RL14_PYRAE5.306e-2545.1150S ribosomal protein L14P OS=Pyrobaculum aerophil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02B02_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618068 ID=DN618068; Name=DN618068; organism=Citrus sinensis; type=EST; length=417bp
TCGCTATTGCTGTCACCTTTAGCTGCGAAAATGTCGAAGCGAGGACGTGG
AGGATCAGCAGGTAACAAGTTCAGGATGTCACTGGGTTTGCCAGTGGCAG
CAACTGTGAACTGTGCTGACAACACTGGGGCAAAGAACCTTTACATCATC
TCAGTTAAGGGAATCAAAGGTCGCCTCAACCGTTTGCCGTCTGCCTGTGT
TGGAGACATGGTTATGGCTACCGTGAAGAAAGGGAAGCCTGATCTTAGGA
AGAAGGTGATGCCCGCCGTCATTGTAAGGCAGCGCAAGCCATGGCGCAGA
AAGGATGGTGTCTTCATGTACTTTGAAGATAATGCTGGTGTTATTGTGAA
TCCAAAGGGAGAAATGAAGGGTTCTGCCATCACCGGTCCAATTGGTAAAG
AGTGTGCTGATTTGTGG
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