DN618063

Overview
NameDN618063
Unique NameDN618063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618063 vs. ExPASy Swiss-Prot
Match: DXS_PSEFS (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas fluorescens (strain SBW25) GN=dxs PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.130e-15
Identity = 46/104 (44.23%), Postives = 60/104 (57.69%), Query Frame = -1
Query:  286 LAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 594
            LA  +  ++ I  TV D RF KPLD  L+R++A  HE+L+TVEE ++ GG G+ V  FL    IL   L L    LPD Y++H  PA  L E GL    I A+V
Sbjct:  523 LAEALKVAEKIDATVVDMRFVKPLDEALVREIAGGHELLVTVEENAIMGGAGAAVSEFLARENILKSVLHLG---LPDVYVEHAKPAQMLAECGLDEAGIEASV 623          
BLAST of DN618063 vs. ExPASy Swiss-Prot
Match: DXS_PSEF5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=dxs PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.130e-15
Identity = 47/112 (41.96%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  271 LAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV---LSLLG 594
            LA  +  ++ +  TV D RF KPLD  L+R++A+ HE+L+T+EE ++ GG G  V  +L    IL   L L    LPD Y++H  PA  L E GL    I A+V   L+LLG
Sbjct:  523 LAEALQVAEKLDATVVDMRFVKPLDEALVREIASSHELLVTIEENAIMGGAGGAVSEYLARENILKPILHLG---LPDAYVEHAKPAQMLAECGLDEAGIEASVRQRLALLG 631          
BLAST of DN618063 vs. ExPASy Swiss-Prot
Match: DXS_RALEH (1-deoxy-D-xylulose-5-phosphate synthase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=dxs PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.312e-15
Identity = 46/102 (45.10%), Postives = 66/102 (64.71%), Query Frame = -1
Query:  271 SQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 573
            ++ +   VAD RF KPLD +L+++LA E++ L+TVEEGSV GG GS V   L  +GI D P  + ++ LPDR++DHG PA  L++ GL +  I  +V    G
Sbjct:  527 AEALDAAVADMRFVKPLDVELVKRLAAENDYLVTVEEGSVMGGAGSAVLEALAEAGI-DKP--VLTLGLPDRFVDHGDPAYLLQQCGLDAAGIERSVRERFG 625          
BLAST of DN618063 vs. ExPASy Swiss-Prot
Match: DXS_PSESM (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas syringae pv. tomato GN=dxs PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.312e-15
Identity = 47/112 (41.96%), Postives = 66/112 (58.93%), Query Frame = -1
Query:  271 LAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV---LSLLG 594
            LA  ++ ++ +  TV D RF KPLD  L+R+ A  HE+L+T+EE +V GG G+ V  FL  + IL   L L    LPD Y++H  PA  L E GL +  I A +   L+L+G
Sbjct:  523 LAEALVVAEKLDATVIDMRFVKPLDEALVRETAASHELLVTLEENAVMGGAGAAVSEFLARANILKSVLHLG---LPDVYVEHAKPAQMLAECGLDAEGIEAAINERLALIG 631          
BLAST of DN618063 vs. ExPASy Swiss-Prot
Match: DXS_PSEPG (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas putida (strain GB-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.588e-14
Identity = 45/110 (40.91%), Postives = 64/110 (58.18%), Query Frame = -1
Query:  268 LAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 594
            LA  M  ++ I+ TV D RF KPLD  L+ +LA  HE+L+T+EE ++ GG G+ V  FL    +L   L L    LPD Y++H  PA  L E GL +  I A+V + + +
Sbjct:  522 LAEAMQVAEQINATVVDMRFVKPLDEALVLELAGSHELLVTIEENAIMGGAGAAVGEFLASQAVLKPLLHLG---LPDIYVEHAKPAQMLAECGLDAAGIEASVKARMAK 628          
BLAST of DN618063 vs. ExPASy Swiss-Prot
Match: DXS_PSEPF (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas fluorescens (strain Pf0-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.588e-14
Identity = 46/113 (40.71%), Postives = 63/113 (55.75%), Query Frame = -1
Query:  268 LAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV---LSLLGR 594
            +A  +  ++ +  TV D RF KP+D  L+R++AN H++L+T+EE ++ GG G  V  FL    IL   L L    LPD Y++H  PA  L E GL    I A V   L LL R
Sbjct:  523 MAEALKVAETLDATVVDMRFVKPMDEALVREIANSHDLLVTIEENAIMGGAGGAVSEFLARENILKSVLHLG---LPDVYVEHAKPAQMLAECGLDEVGIEAAVRERLELLNR 632          
BLAST of DN618063 vs. ExPASy Swiss-Prot
Match: DXS_PSEP1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=dxs PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.074e-14
Identity = 45/104 (43.27%), Postives = 61/104 (58.65%), Query Frame = -1
Query:  286 LAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 594
            LA  M  ++ I+ TV D RF KPLD  L+ +LA  HE+L+T+EE ++ GG G+ V  FL    +L   L L    LPD Y++H  PA  L E GL +  I A+V
Sbjct:  522 LAEAMQVAEQINATVVDMRFVKPLDEALVLELAGSHELLVTIEENAIMGGAGAAVGEFLASQAVLKPLLHLG---LPDIYVEHAKPAQMLAECGLDAAGIEASV 622          
BLAST of DN618063 vs. ExPASy Swiss-Prot
Match: DXS_PSE14 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=dxs PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.709e-14
Identity = 46/112 (41.07%), Postives = 66/112 (58.93%), Query Frame = -1
Query:  271 LAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV---LSLLG 594
            LA  ++ ++ +  TV D RF KPLD  L+ + A  HE+L+T+EE +V GG G+ V  FL  + IL   L L    LPD Y++H  PA  L E GL ++ I A +   L+L+G
Sbjct:  522 LADALVVAEKLDATVIDMRFVKPLDEALVSEAAANHELLVTLEENAVMGGAGAAVSEFLARANILKSVLHLG---LPDTYVEHAKPAQMLAECGLDAQGIEAAINERLALIG 630          
BLAST of DN618063 vs. ExPASy Swiss-Prot
Match: DXS_METPP (1-deoxy-D-xylulose-5-phosphate synthase OS=Methylibium petroleiphilum (strain PM1) GN=dxs PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.709e-14
Identity = 43/106 (40.57%), Postives = 63/106 (59.43%), Query Frame = -1
Query:  259 SQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKE 573
            ++ +  TVA+ RF KPLDT+L+  LA  HE L+TVEEG + GG GS V   L  +G+    L + ++ LPD +++HG PA  L + GL +  I  ++L   G   E
Sbjct:  521 AEKLDATVANMRFIKPLDTELVLSLARSHEALVTVEEGCLQGGAGSAVLEALQAAGV---NLPVLTLGLPDEFVEHGDPAKLLAQLGLDAAGIEQSILKRFGAKLE 623          
BLAST of DN618063 vs. ExPASy Swiss-Prot
Match: DXS_BURS3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia sp. (strain 383) GN=dxs PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.709e-14
Identity = 43/105 (40.95%), Postives = 65/105 (61.90%), Query Frame = -1
Query:  286 VLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 597
            ++A ++  ++++  TVA+ RF KP+D  L+R+LA  H+ L+TVEEG V GG GS     L  SG++   L+L    LPD +IDHG PA  L + GL    I+ ++
Sbjct:  514 MVAPSLAAAEELDATVANMRFVKPVDAALVRELAETHDYLVTVEEGCVMGGAGSACVEALMESGVIRPVLQLG---LPDLFIDHGDPAKLLSQCGLDGAGIAKSI 615          
The following BLAST results are available for this feature:
BLAST of DN618063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
DXS_PSEFS7.130e-1544.231-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEF57.130e-1541.961-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_RALEH9.312e-1545.101-deoxy-D-xylulose-5-phosphate synthase OS=Ralston... [more]
DXS_PSESM9.312e-1541.961-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEPG1.588e-1440.911-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEPF1.588e-1440.711-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEP12.074e-1443.271-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSE142.709e-1441.071-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_METPP2.709e-1440.571-deoxy-D-xylulose-5-phosphate synthase OS=Methyli... [more]
DXS_BURS32.709e-1440.951-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02A24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002A24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618063 ID=DN618063; Name=DN618063; organism=Citrus sinensis; type=EST; length=597bp
CCCCCCTTTTTACGGTGGAAGATCAATGGGCCTTGTATCTTTATTACAAG
AAAAAATTGTGAATGTACAGAAACAACAAAAGGCTTGACCATTACATTTA
TAATCCCACGGTAATGCTTCATGGTTACAGGGGATATGAAGGTAAAGATT
CTAAGAGTTGGACCTTATAGTGTATAACACCCCCAACTTGGAATTGTAAG
TTGGATCCGAAGGGCAAGATGTTGTTTGATTTTGTATGATTACTTAAATC
AGAAGGGCTTCTTTTGGCCTCCCTAAGAGAGATAAGACTGTTGCAGAGAT
ATGCCTTGAGGAGAGCCCTGATTCTTCAAGCTGATCGGCTGGTGATCCAT
GGTCAATGTATCTATCAGGAAGCACCATTGATCTCAACTTGAGAGGTCCA
TCCAGAATGCCACTTAAGGTTAGAAAGTGACATACATGAGAGCCAAAGCC
TCCCACAGAACCCTCTTCCACAGTAATTAGGATTTCATGCTCATTGGCCA
ACTGTCTAATGAGGTCTGTATCCAAAGGTTTGCAAAATCTTGCATCAGCC
ACTGTCACGGAAATGTCTTGGCTCTTAAGCATGTTCGCAGCTAGCAC
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