DN618052

Overview
NameDN618052
Unique NameDN618052
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN618052 vs. ExPASy Swiss-Prot
Match: TEST2_RAT (Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 42/115 (36.52%), Postives = 59/115 (51.30%), Query Frame = 1 
Query:  349 RYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYR----LGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLE 681
            ++GK Y   EE +L+ A + KN  +I   N + L  R    + +N F D +  EF +   G  +     T          +P+  DWR+ G V+PVK+QGHC S W FS TGSLE
Sbjct:   35 KHGKTYNMNEE-RLKRAVWEKNFKMIELHNWEYLEGRHDFTMAMNAFGDLTNIEFVKMMTGFQRQKIKKTHIFQDHQFLYVPKRVDWRQLGYVTPVKNQGHCASSWAFSATGSLE 148
[Close]
BLAST of DN618052 vs. ExPASy Swiss-Prot
Match: CATL1_CHICK (Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:  580 PETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGIS 717
            P + DWRE G V+PVKDQG CGSCW FSTTG+LE  + +  GK +S
Sbjct:    2 PRSVDWREKGYVTPVKDQGQCGSCWAFSTTGALEGQHFRTKGKLVS 47
The following BLAST results are available for this feature:
BLAST of DN618052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
TEST2_RAT8.761e-1136.52Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2[more]
CATL1_CHICK8.761e-1160.87Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02A18_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002A18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618052 ID=DN618052; Name=DN618052; organism=Citrus sinensis; type=EST; length=719bp
ATATAATTGAGATGAATTATGTAAGTTACATTGAAGATAACTTAGCACTT
GCCGAATAATAATAGTGTTCATAGACTGCATTCATTTAATCCGAAGCCCT
TGAGTGCAGTGTGCTCTCTCCAAACAAAGCAGACACAATCATTAGGCATG
GCTCGCCCCGTACAGTTGGTCTCGTCCGTCATCTTGTTGCTTTGCTGCGC
TGCCGCAGCATCAGCATCAGCATCAAGCTTCGACGACTCCAATCCGATCA
GATTGGTATCATCGGACGGTCTCCGTGACTTCGAGACCTCCGTCCTCCAG
GTGATCGGCCAAGCCCGCCATGCTCTCTCCTTTGCCCGTTTTGCTCGCAG
GTATGGGAAGATTTACGAGTCCGTTGAGGAGATGAAGCTCCGGTTCGCGA
CTTTCTCCAAGAACTTGGATTTAATCAGATCTACCAATTGTAAAGGCCTA
TCTTACAGGCTCGGGTTGAACAAGTTTGCTGACTGGAGCTGGGAAGAGTT
CCAAAGGCACAGGTTGGGAGCTGCGCAAAACTGCTCTGCCACTACAAAAG
GAAATCACAAGCTTACTGCTGATGTGCTTCCAGAAACGAAAGACTGGAGG
GAATCTGGCATAGTAAGCCCAGTTAAAGACCAAGGTCACTGTGGATCTTG
CTGGACTTTCAGCACGACTGGATCTCTTGAGGCTGCTTACCACCAGGCCT
TTGGAAAGGGTATCTCTTT
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