DN618051

Overview
NameDN618051
Unique NameDN618051
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN618051 vs. ExPASy Swiss-Prot
Match: CATW_MOUSE (Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.965e-11
Identity = 32/90 (35.56%), Postives = 48/90 (53.33%), Query Frame = -3 
Query:  251 YKSGVYSSTKCGNTPMDVNHAVVAVGYGVE-DGV----------------PYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 469
            Y+ GV  +T     P  V+H+V+ VG+G + +G+                PYW++KNSWG +WG+ GYF++  G N CG+     YP  A
Sbjct:  270 YQKGVIKATPSSCDPRQVDHSVLLVGFGKKKEGMQTGTVLSHSRKRRHSSPYWILKNSWGAHWGEKGYFRLYRGNNTCGV---TKYPFTA 356
[Close]
BLAST of DN618051 vs. ExPASy Swiss-Prot
Match: CATW_HUMAN (Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 8.965e-11
Identity = 33/95 (34.74%), Postives = 49/95 (51.58%), Query Frame = -3 
Query:  251 RFYKSGVYSSTKCGNTPMDVNHAVVAVGYGV---EDGV-----------------PYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 475
            + Y+ GV  +T     P  V+H+V+ VG+G    E+G+                 PYW++KNSWG  WG+ GYF++  G N CGI     +P+ A
Sbjct:  270 QLYRKGVIKATPTTCDPQLVDHSVLLVGFGSVKSEEGIWAETVSSQSQPQPPHPTPYWILKNSWGAQWGEKGYFRLHRGSNTCGI---TKFPLTA 361
The following BLAST results are available for this feature:
BLAST of DN618051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
CATW_MOUSE8.965e-1135.56Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1[more]
CATW_HUMAN8.965e-1134.74Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02A18_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002A18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618051 ID=DN618051; Name=DN618051; organism=Citrus sinensis; type=EST; length=495bp
ACAAAATATATATAACATCCGTTGGTGTCCTAGTCACAATGACTGTTTAC
ATGGACATAGATCTCAGAATTTATTTTGAACATCAAGCAGCCATGCATTG
CTATTGTAGATTATATGGACATTAATCTCCGAATTTATTTCGTACATAAA
GCCAACCATTCTGCTATCATTCTTGAGTGAAATAATATAAGTTTTATGAG
CAAATGACTTGCTGATAGCCAGATCCAACTATTTCTTCAGGAGCAGACTA
AGCCACAACTGGGTATGATGCACAAGTTGCAATACCACACATGTTCTTCC
CCATCTCCATCTTAAAGTAGCCATGATCGCCCCAGTTCTCTCCCCAAGAG
TTCTTAATCAGCCAATATGGAACACCATCTTCAACTCCGTACCCAACAGC
AACGACGGCATGGTTCACATCCATGGGAGTATTTCCACATTTAGTGCTGC
TGTAAACTCCACTCTTGTAAAATCGGAATCCATCTACTACTTCAA
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