DN617980

Overview
NameDN617980
Unique NameDN617980
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_CYAME (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidioschyzon merolae GN=pdhB PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.423e-44
Identity = 91/151 (60.26%), Postives = 114/151 (75.50%), Query Frame = -2
Query:  134 EHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 586
            EHVLLYNLK+ IP +EY+  L++A++VR G  VTI+TYSRM +HVMQA K LV +G +PEVID+ SLKP DL T+  S+ KTH+ +IVEECM+TGGI A + A I  +  D LDAPI  LSS+DVPTPY G LE+  +VQP QIV AV+ L
Sbjct:  173 EHVLLYNLKQEIPKQEYVLPLDKAQVVREGSDVTIITYSRMLHHVMQAVKQLVAQGMNPEVIDLISLKPIDLETLVTSVSKTHKAIIVEECMQTGGIAAEVMAQIYSHAFDELDAPIRRLSSKDVPTPYNGYLEQACLVQPTQIVEAVKTL 323          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_DICDI (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Dictyostelium discoideum GN=pdhB PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.338e-26
Identity = 65/157 (41.40%), Postives = 100/157 (63.69%), Query Frame = -2
Query:  128 EHVLLYNLK----ERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ 586
            E  LLYN K    ++  D+EY+  + +A++ R G+ VTI+ +SR+  + M+AA+ L  +G   EVI++R+++P D  TI NS+KKT++++ VEE     GIGA ++A + E+  DYLDAPI  +   DVP PYA  LE   +VQ   IV A +++ Q
Sbjct:  197 ESELLYNYKFDLSDQEQDKEYLVPIGKAKVEREGKDVTIVGFSRIVSNCMEAAEILAKEGISAEVINLRTIRPIDAETIVNSLKKTNKLVTVEEGWAQSGIGAEISALMMEHAFDYLDAPIERICGADVPMPYASNLENAAMVQTQNIVNAAKRVTQ 353          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_RICFE (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia felis GN=pdhB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.808e-23
Identity = 58/152 (38.16%), Postives = 92/152 (60.53%), Query Frame = -2
Query:  131 EHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLC 586
            E+ +LY     +P+        +A+++R G  VTI+T+S      + AA  L N   D EVID+R++KP D  TI  S+KKT+R++IVEE     G+GAS+ + + +   DYLDAPI  +S +DVP P+A  LE+  +   + ++ AV+++C
Sbjct:  171 ENEILYGHSFDVPETIEPIPFGQAKILREGSSVTIVTFSIQVKLALDAANVLQNDNIDCEVIDLRTIKPLDTDTIIESVKKTNRLVIVEEGWFFAGVGASIASIVMKEAFDYLDAPIEIVSGKDVPLPFAVNLEKLALPSESDVIEAVKKVC 322          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_RICCN (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia conorii GN=pdhB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.999e-22
Identity = 56/152 (36.84%), Postives = 90/152 (59.21%), Query Frame = -2
Query:  131 EHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLC 586
            E+ +LY     +P         +A+++R G  VTI+T+S      + AA  + N   D EVID+R++KP D  TI  S+KKT+R+++VEE     G+GAS+ + + +   DYLDAPI  +S +D+P PYA  LE   +   + ++ AV+++C
Sbjct:  171 ENEILYGHSFDVPKTIEPIPFGQAKILREGSSVTIVTFSIQVKLALDAANFVQNDNIDCEVIDLRTIKPLDTETIIESVKKTNRLVVVEEGWFFAGVGASIASIVMKEAFDYLDAPIEIVSGKDLPLPYAVNLETLALPSESDVIEAVKKVC 322          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_RICPR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia prowazekii GN=pdhB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.596e-22
Identity = 55/152 (36.18%), Postives = 90/152 (59.21%), Query Frame = -2
Query:  131 EHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLC 586
            E+ +LY     +PD        +A++++ G +VTI+T+S      +     L N   D E+ID+R++KP D  +I  S+KKT+R++IVEE     G+GAS+ + + +   DYLDAPI  +S +DVP PYA  LE+  +     ++ AV+++C
Sbjct:  171 ENEILYGHSFDVPDIIEPIPFSKAKILKEGSNVTIVTFSIQVKLALDVVNILQNDNIDCELIDLRTIKPLDTDSIIESVKKTNRLVIVEEGWFFAGVGASIASIVMKEAFDYLDAPIEIVSGKDVPLPYAVNLEKLAMPSANDLIEAVKKVC 322          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_ARATH (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 7.596e-22
Identity = 57/156 (36.54%), Postives = 90/156 (57.69%), Query Frame = -2
Query:  131 EHVLLYN----LKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLC 586
            E+ LLY     + E   D  +   + +A++ R G+ VTI+T+S+M    ++AA+ L  +G   EVI++RS++P D  TI  S++KT R++ VEE     G+ A + A++ E    YLDAP+  ++  DVP PYA  LE   + Q   IV A ++ C
Sbjct:  204 ENELLYGESFPISEEALDSSFCLPIGKAKIEREGKDVTIVTFSKMVGFALKAAEKLAEEGISAEVINLRSIRPLDRATINASVRKTSRLVTVEEGFPQHGVCAEICASVVEESFSYLDAPVERIAGADVPMPYAANLERLALPQIEDIVRASKRAC 359          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_RICTY (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia typhi GN=pdhB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.921e-22
Identity = 55/152 (36.18%), Postives = 89/152 (58.55%), Query Frame = -2
Query:  131 EHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLC 586
            E+ +LY     +PD        +A++++ G +VTI+T+S      +     L N   D E+ID+R++KP D   I  S+KKT+R++IVEE     G+GAS+ + + +   DYLDAPI  +S +DVP PYA  LE+  +     ++ AV+++C
Sbjct:  171 ENEILYGHSFDVPDIIEPIPFSKAKILKEGSNVTIVTFSIQVKLALDVVNILQNDNIDCELIDLRTIKPLDTNMIIESVKKTNRLVIVEEGWFFAGVGASIASIVMKEAFDYLDAPIEIVSGKDVPLPYAVNLEKLAMPSANDLIEAVKKVC 322          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_RHIME (Pyruvate dehydrogenase E1 component subunit beta OS=Rhizobium meliloti GN=pdhB PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.296e-21
Identity = 50/153 (32.68%), Postives = 92/153 (60.13%), Query Frame = -2
Query:  131 EHVLLYNLKERIPD-EEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLC 586
            E+ +LY     +P  ++++  + +A + R G+  T++++     + ++AA  L  +G D E+ID+R+++P DL T+  S+KKT R++ VEE      +G  +   + +   DYLDAPI+ ++ +DVP PYA  LE+  +   A++V AV+ +C
Sbjct:  306 ENEILYGQSFEVPKLDDFVLPIGKARIHRTGKDATLVSFGIGMTYAIKAAAELEAQGIDVEIIDLRTIRPMDLPTVIESVKKTGRLVTVEEGYPQSSVGTEIATRVMQQAFDYLDAPILTIAGKDVPMPYAANLEKLALPNVAEVVDAVKAVC 458          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_ZYMMO (Pyruvate dehydrogenase E1 component subunit beta OS=Zymomonas mobilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.210e-21
Identity = 55/150 (36.67%), Postives = 90/150 (60.00%), Query Frame = -2
Query:  131 LLYNLKERIPD-EEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLC 577
            LLY     +P  ++++  + +A ++R G+ VTI++YS      + AA+ L  +G D EVID+R+L+P D  TI  S+ KT+R++ VE+      I + + A   E   D LDAP++ +++ D PTPYA  LE+  +V P  I+ AV ++C
Sbjct:  310 LLYGKTFDVPKMDDFVLPIGKARIIREGKDVTIVSYSIGVSFALTAAEALAKEGIDAEVIDLRTLRPLDKETILQSLAKTNRIVTVEDGWPVCSISSEIAAIAMEEGFDNLDAPVLRVTNADTPTPYAENLEKKGLVNPEAIIEAVRKVC 459          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_RICBR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia bellii (strain RML369-C) GN=pdhB PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.210e-21
Identity = 54/152 (35.53%), Postives = 91/152 (59.87%), Query Frame = -2
Query:  131 EHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLC 586
            E+ +LY     I +        +A++++ G+ VTI+T+S      + AA  L +   + EVID+R++KP D+ TI  S+KKT R++++EE     GIGA++ A + +   DYLDAP+  +S +DVP PYA  LE+  +     ++ AV+++C
Sbjct:  171 ENEILYGHSFDISENVEPIPFGKAKVLKEGDSVTIVTFSIQVKLALDAANILQSDNINCEVIDLRTIKPLDIDTIIESVKKTGRLVVIEEGWFFAGIGATIAAIVMKEAFDYLDAPVEIVSGKDVPLPYAVNLEKLALPSEYDVINAVKKVC 322          
The following BLAST results are available for this feature:
BLAST of DN617980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ODPB_CYAME1.423e-4460.26Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_DICDI1.338e-2641.40Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RICFE1.808e-2338.16Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICCN1.999e-2236.84Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICPR7.596e-2236.18Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ARATH7.596e-2236.54Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RICTY9.921e-2236.18Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RHIME1.296e-2132.68Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ZYMMO2.210e-2136.67Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICBR2.210e-2135.53Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01P06_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617980 ID=DN617980; Name=DN617980; organism=Citrus sinensis; type=EST; length=590bp
TTTTTTTTTTTTTTTTTATCGCACAAAATTGCTAACAATCTTAATAAATA
AATATTCAAAGCAAAGCTGCTGAGAACTAACACTGCATAGATAGATTCGG
TTATGACACTTCGGTATTCAAAAACTATTGGCAAAGCTGCTCAACTGCTG
TCACAATCTGGGCAGGTTGAACCACAGTCCATTCCTCCAATGTGCCGGCA
TATGGAGTTGGCACGTCCTGTGATGATAAGCATACAATAGGAGCATCCAA
GTAATCATGGAAATTCTCAGTGATAGCTGCAGTTAAACTAGCACCAATTC
CACCAGTCCGCATGCACTCCTCCACAATCAGTACACGATGTGTCTTTTTA
ATTGAATTTCCAATGGTATAAAGATCAAATGGTTTCAATGACCTGATGTC
AATAACCTCAGGATCATACCCTTTGTTTACCAAAGTTTTAGCAGCTTGCA
TCACATGATACCTCATTCGAGAATAGGTTAAAATAGTGACATGCTCCCCA
GGCCTAACCATCTCAGCTTCCTCAAGATTACAAATGTATTCCTCATCTGG
AATCCTTTCCTTGAGGTTGTAAAGCAACACATGCTCGAAA
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